ID A0A2K3PQK2_TRIPR Unreviewed; 706 AA.
AC A0A2K3PQK2;
DT 28-MAR-2018, integrated into UniProtKB/TrEMBL.
DT 28-MAR-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE SubName: Full=HAT family dimerization domain-containing protein {ECO:0000313|EMBL:PNY17566.1};
GN ORFNames=L195_g014313 {ECO:0000313|EMBL:PNY17566.1};
OS Trifolium pratense (Red clover).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=57577 {ECO:0000313|EMBL:PNY17566.1, ECO:0000313|Proteomes:UP000236291};
RN [1] {ECO:0000313|EMBL:PNY17566.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY17566.1};
RX PubMed=24500806; DOI=10.3732/ajb.1300340;
RA Istvanek J., Jaros M., Krenek A., Repkova J.;
RT "Genome assembly and annotation for red clover (Trifolium pratense;
RT Fabaceae).";
RL Am. J. Bot. 101:327-337(2014).
RN [2] {ECO:0000313|EMBL:PNY17566.1, ECO:0000313|Proteomes:UP000236291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Tatra {ECO:0000313|Proteomes:UP000236291};
RC TISSUE=Young leaves {ECO:0000313|EMBL:PNY17566.1};
RX PubMed=28382043; DOI=10.3389/fpls.2017.00367;
RA Istvanek J., Dluhosova J., Dluhos P., Patkova L., Nedelnik J., Repkova J.;
RT "Gene Classification and Mining of Molecular Markers Useful in Red Clover
RT (Trifolium pratense) Breeding.";
RL Front. Plant Sci. 8:367-367(2017).
CC -!- SUBUNIT: Homodimer. {ECO:0000256|ARBA:ARBA00011738}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PNY17566.1}.
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DR EMBL; ASHM01009472; PNY17566.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2K3PQK2; -.
DR Proteomes; UP000236291; Unassembled WGS sequence.
DR ExpressionAtlas; A0A2K3PQK2; baseline.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; IEA:UniProt.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR46481:SF4; ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 39; 1.
DR PANTHER; PTHR46481; ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF14372; hAT-like_RNase-H; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SMART; SM00614; ZnF_BED; 1.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000236291};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00027}.
FT DOMAIN 33..85
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
SQ SEQUENCE 706 AA; 80425 MW; 893C47F5112D41FF CRC64;
MGDCDDILAS ETAEHMFSAH PLAVSPPLSK PRRNRSDAWN HFTIDSDIAK KAKCNYCGSL
IGYDKGTSAM RAHFTRCKDN PMKNVNKRQK SVSASTENVE EHICTSPSTP MFDQEAIQNV
VVKMFVALDI PFERVEHAAF QNFMSVVLPR FKVPSSTELA HDVLRLWGTE KTRLKKFLSQ
HCQRVCLTID TWTSSEKFCY MCLTAHFIDK DWKMHKKVLN FSQVTSHKRE VMAKTVEQCL
NEWGLNCVLS LTINNDSLND VDILHLKDKL VSRNSLVLNG DFIHMRCCAY FLNLIVKESL
KEIDDSVVRI CAAVWYIRSS NWRFTRFKAC AEQQNIEYKG FACLDFETRW DSIYLMLEDA
LKHHKTFEKL EMKDHKYVDE LKKGKGVPTI EDWEIVRSIL PFLKLFYDAT LRISSSSCVT
SNMYMFEVLG IGMAIKNMCN SGDVRISLMA KNMRQKYDKF WGNANSLNML LLVGLVLDPR
HKVKFVNWCA SKNYNGEEAD YLIDKLKSCL NSLFEEYNGG LEVSHTKSKE GGYNDPYGFN
KFYQSSGCKK SETELSKYLD EALESGGDLD VLNWWKLNSS RFPIIANIAR DVLAIPVSTM
TPEFALSIAG RVLDSYQSSL PPITMEALIC TQDWLMGAAS PLLTNVEIEN LEKIEQGVAG
VGVAVVLFQI ADEDVPWQDS APVTYTIDIV NVMEWCSFSV NEAYKM
//
