ID   A0A2M8RYB2_9PAST        Unreviewed;       766 AA.
AC   A0A2M8RYB2;
DT   25-APR-2018, integrated into UniProtKB/TrEMBL.
DT   25-APR-2018, sequence version 1.
DT   24-JAN-2024, entry version 18.
DE   SubName: Full=RNA-binding transcriptional accessory protein {ECO:0000313|EMBL:PJG83878.1};
GN   ORFNames=CVP04_01955 {ECO:0000313|EMBL:PJG83878.1};
OS   Caviibacterium pharyngocola.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
OC   Pasteurellaceae; Caviibacterium.
OX   NCBI_TaxID=28159 {ECO:0000313|EMBL:PJG83878.1, ECO:0000313|Proteomes:UP000230282};
RN   [1] {ECO:0000313|EMBL:PJG83878.1, ECO:0000313|Proteomes:UP000230282}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=7_3 {ECO:0000313|EMBL:PJG83878.1,
RC   ECO:0000313|Proteomes:UP000230282};
RA   Christensen H.;
RT   "Reclassification of Bisgaard taxon 5 as Caviibacterium pharyngocola gen.
RT   nov., sp. nov.";
RL   Submitted (NOV-2017) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PJG83878.1}.
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DR   EMBL; PHGZ01000004; PJG83878.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2M8RYB2; -.
DR   OrthoDB; 9804714at2; -.
DR   Proteomes; UP000230282; Unassembled WGS sequence.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR   CDD; cd05685; S1_Tex; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR   Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR   Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR   Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR   InterPro; IPR041692; HHH_9.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR010994; RuvA_2-like.
DR   InterPro; IPR003029; S1_domain.
DR   InterPro; IPR044146; S1_Tex.
DR   InterPro; IPR023323; Tex-like_dom_sf.
DR   InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR   InterPro; IPR018974; Tex-like_N.
DR   InterPro; IPR032639; Tex_YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR   PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR   Pfam; PF12836; HHH_3; 1.
DR   Pfam; PF17674; HHH_9; 1.
DR   Pfam; PF00575; S1; 1.
DR   Pfam; PF09371; Tex_N; 1.
DR   Pfam; PF16921; Tex_YqgF; 1.
DR   SMART; SM00316; S1; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR   SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR   PROSITE; PS50126; S1; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000230282}.
FT   DOMAIN          651..720
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   REGION          722..753
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        722..746
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   766 AA;  85507 MW;  29A5234024E20D2D CRC64;
     MLNQQLSQII AAELSVRAEQ ILAAIRLLDE GNTIPFIARY RKEVTGGLDD TQLRHFETRL
     VYLRELEDRR QTILKSIEEQ GKLTDDLRTQ LLATQSKTEL EDLYLPYKPK RRTKGQIAIE
     AGLEPLAETL WNDPSRDPEQ EARAYIDAEK GVADAKSALD GARYIFMERF AEDAQLLAKV
     RRYLQQSAVL ISKVCEGKEQ EGAKFQDYFD HQELLRNVPS HRALAMFRGR NEGILQLTLN
     ADPEQEEGAR QSYCEEIIRE HLGVRFNQQP ADKWREQVIS WTWRSKVSLH LETELMSALR
     EKAEDEAINV FARNLTALLM AAPAGAKNTM GLDPGLRTGV KVAVVDNTGK LLATETIYPH
     TGQEDRAGLA IYQLIKQHNV ELIAIGNGTA SRETERFAKE VIKQIPDNKP QTVVVSEAGA
     SVYSASELAA QEFPQLDVSL RGAVSIARRL QDPLAELVKI EPKAIGVGQY QHDVNQTQLA
     RKLDAVVEDC VNAVGVDLNT ASVALLARVA GMSKTLAQNI VAYRDENGRF DSREQLKNVP
     RLGPKAFEQC AGFMRIAQGK NPLDASGVHP EAYPIVEKIL QATEQSVQDL MGNASALRQL
     DAKRFIDEQF GLPTVLDIFK ELEKPGRDPR GEFKTAVFTD DVEEISDLKA GMILEGTITN
     VTNFGAFVDI GVHQDGLVHI SSLSDKFVED PHQVVKTGDI VKVKVLDVDV ARKRIALTMR
     LDERPTENKE KNNRTLSAKT RQSAPRERHN GAMGNAFADA LKNWKK
//