ID A0A2N7DED3_9VIBR Unreviewed; 305 AA.
AC A0A2N7DED3;
DT 25-APR-2018, integrated into UniProtKB/TrEMBL.
DT 25-APR-2018, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE SubName: Full=Peptidase {ECO:0000313|EMBL:PMH43285.1};
GN ORFNames=BCU68_03940 {ECO:0000313|EMBL:PMH43285.1};
OS Vibrio sp. 10N.286.49.B3.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Vibrio.
OX NCBI_TaxID=1880855 {ECO:0000313|EMBL:PMH43285.1, ECO:0000313|Proteomes:UP000235563};
RN [1] {ECO:0000313|Proteomes:UP000235563}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=10N.286.49.B3 {ECO:0000313|Proteomes:UP000235563};
RA Kauffman K., Hussain F., Yang J., Arevalo P., Brown J., Cutler M.,
RA Kelly L., Polz M.F.;
RT "Nontailed viruses are major unrecognized killers of bacteria in the
RT ocean.";
RL Submitted (JUL-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000256|ARBA:ARBA00004418}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PMH43285.1}.
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DR EMBL; MCUV01000024; PMH43285.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2N7DED3; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000235563; Unassembled WGS sequence.
DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
DR GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd00118; LysM; 1.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR Gene3D; 3.10.350.10; LysM domain; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR041597; Ldt_C.
DR InterPro; IPR018392; LysM_dom.
DR InterPro; IPR036779; LysM_dom_sf.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF24; L,D-TRANSPEPTIDASE ERFK_SRFK-RELATED; 1.
DR Pfam; PF17969; Ldt_C; 1.
DR Pfam; PF01476; LysM; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF54106; LysM domain; 1.
DR PROSITE; PS51782; LYSM; 1.
DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1.
PE 3: Inferred from homology;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Periplasm {ECO:0000256|ARBA:ARBA00022764};
KW Reference proteome {ECO:0000313|Proteomes:UP000235563};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT SIGNAL 1..23
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 24..305
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5014691965"
FT DOMAIN 40..84
FT /note="LysM"
FT /evidence="ECO:0000259|PROSITE:PS51782"
SQ SEQUENCE 305 AA; 33961 MW; 8077608E1D5E10E0 CRC64;
MPRKWKSALL GLCLSASSGC LLAATYSLPS DESKMVGRLQ RHMVDKGETL ANIAKHYDVG
FLALMAANQG VDPFLPADGH VLTIPTQLIL PDVPKEGIVI NLAELRLYYF EPKKDQVHIF
PVGIGRIGRD TPEMKTSISQ KRANPTWTPP QSIRKEYLEK GVTLPTVVPA GPDNPLGEYA
LRLSYGMGDY LIHGTNKDFG IGLRVSSGCI RMEPKDIEWL FNQVKKGEKV RIIDEPIKVA
FEPDRSVFIE VHEPLTRSNG TKKELELPSD LNRWLEMYNF SLSKAKSVIL AQNGLPIEIV
TPTNE
//
