ID A0A2P5EZ84_TREOI Unreviewed; 1316 AA.
AC A0A2P5EZ84;
DT 23-MAY-2018, integrated into UniProtKB/TrEMBL.
DT 23-MAY-2018, sequence version 1.
DT 24-JAN-2024, entry version 20.
DE RecName: Full=Cleavage and polyadenylation specificity factor subunit 2 {ECO:0000256|RuleBase:RU365006};
DE AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit {ECO:0000256|RuleBase:RU365006};
GN ORFNames=TorRG33x02_132540 {ECO:0000313|EMBL:PON90848.1};
OS Trema orientale (Charcoal tree) (Celtis orientalis).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Cannabaceae; Trema.
OX NCBI_TaxID=63057 {ECO:0000313|EMBL:PON90848.1, ECO:0000313|Proteomes:UP000237000};
RN [1] {ECO:0000313|Proteomes:UP000237000}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. RG33-2 {ECO:0000313|Proteomes:UP000237000};
RA Van Velzen R., Holmer R., Bu F., Rutten L., Van Zeijl A., Liu W.,
RA Santuari L., Cao Q., Sharma T., Shen D., Roswanjaya Y., Wardhani T.,
RA Kalhor M.S., Jansen J., Van den Hoogen J., Gungor B., Hartog M.,
RA Hontelez J., Verver J., Yang W.-C., Schijlen E., Repin R., Schilthuizen M.,
RA Schranz E., Heidstra R., Miyata K., Fedorova E., Kohlen W., Bisseling T.,
RA Smit S., Geurts R.;
RT "Parallel loss of symbiosis genes in relatives of nitrogen-fixing non-
RT legume Parasponia.";
RL Submitted (JUN-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|RuleBase:RU365006}.
CC -!- SIMILARITY: Belongs to the metallo-beta-lactamase superfamily. RNA-
CC metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily.
CC {ECO:0000256|RuleBase:RU365006}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PON90848.1}.
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DR EMBL; JXTC01000079; PON90848.1; -; Genomic_DNA.
DR STRING; 63057.A0A2P5EZ84; -.
DR InParanoid; A0A2P5EZ84; -.
DR OrthoDB; 198429at2759; -.
DR Proteomes; UP000237000; Unassembled WGS sequence.
DR GO; GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006378; P:mRNA polyadenylation; IEA:InterPro.
DR CDD; cd16293; CPSF2-like_MBL-fold; 1.
DR Gene3D; 3.60.15.10; Ribonuclease Z/Hydroxyacylglutathione hydrolase-like; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR022712; Beta_Casp.
DR InterPro; IPR027075; CPSF2.
DR InterPro; IPR025069; Cpsf2_C.
DR InterPro; IPR035639; CPSF2_MBL.
DR InterPro; IPR001279; Metallo-B-lactamas.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR036866; RibonucZ/Hydroxyglut_hydro.
DR InterPro; IPR011108; RMMBL.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 12.
DR PANTHER; PTHR45922; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2; 1.
DR PANTHER; PTHR45922:SF1; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2; 1.
DR Pfam; PF10996; Beta-Casp; 1.
DR Pfam; PF13299; CPSF100_C; 1.
DR Pfam; PF16661; Lactamase_B_6; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 6.
DR Pfam; PF07521; RMMBL; 1.
DR SMART; SM01027; Beta-Casp; 1.
DR SUPFAM; SSF56281; Metallo-hydrolase/oxidoreductase; 1.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664,
KW ECO:0000256|RuleBase:RU365006};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU365006};
KW Reference proteome {ECO:0000313|Proteomes:UP000237000};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|RuleBase:RU365006}.
FT DOMAIN 242..365
FT /note="Beta-Casp"
FT /evidence="ECO:0000259|SMART:SM01027"
FT REPEAT 764..798
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 799..833
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 868..902
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 903..937
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 938..972
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 973..1007
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 1008..1042
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 1043..1077
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 1108..1142
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 1143..1177
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 1178..1212
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 1213..1247
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 1316 AA; 146063 MW; 1D7C147F2B052B2A CRC64;
MGTSVQVTPL CGVYSENPLS YLVSIDGFNF LVDCGWNDHF DPSILQPLSK VASTIDAVLL
SHPDTLHLGA LPYATKQFGL SPQVFCTEPV FRLGLLTMYD QFLSRKQVSE FDLFTLDDID
SAFQNVTRLT YAQNHHLSGK GEGIVISPHV AGHLLGGTVW KITKDGEDVI YAVDFNHRKE
KHLNGINPSS FVRPAILITD AYNALNNQPY RRQMDREFTD TIKKTLRGDG KVLLPVDTAG
RVLELIQILE SCWAEENLNY PIYFLTYVAS STIDYVKSFL EWMSDSIAKS FEKTRDNAFL
LKHVTLLVNK NELDNAPDVP KVVLASMASL EAGFSHDIFV EWATDARNLV LFTERGQFGT
LARMLQADPP PKAVKVTMSK RVPLVGEELI AYEEEQNRIK REEALKASLI KEEESKASHG
ADTNMSDPMV IDASSTHPLP DVACPHGSGY RDVFIDGFVP PSTSVAPMFP FYENTSEWDD
FGEVINPDDY VIKDEDMDQA GMLVGGDMDA KLDEASASLI LDTKPSKVIS NESTVPVKCS
LLYMDFEGRS DARSIKSILS HMAPLKLVLV HGTAEATEHL KQHCMKQVCP HVYAPQIEET
IDVTSDLCAY KVQLSEKLMS NVLFKKLGDY EIAWVDSEVG KTENGTLSLL PLSTAPPPHK
SVLVGDLKMA NFKQFLADNG VQAEFAGGGA LRCGEYVTLR KVGDASHKGG GPETLQFFAH
LQRASKFPTP FTCNKLLHRL TSSDCGELSL KILSHLLSKG YVPHPSSFNS VLSFLCKLGH
FGFAQKVVNS MPRFGCVPDV VTYNSLIDGY CKNSDIGQAC FIVNKMCLGQ CRPDLVTFNI
LFNGFSKLKM EKESFVYMGL MWKCCLPNVV TYSTWVDMFC KKGDLGMGFK VFNEMVSVGV
WPNSVAFTSL IDGYCKAGTV EVALKLFGEM KGSSVMPNVV TYTALIDGLC KQGLLEKADS
LFSKMLEDGV KPNSAVYTSI IDGHFTKGNI DNAMKYMTKM CDQGIRLDIT SYEVVIWGFC
KNDQLDKASE VLRTMVESGL SPDKIMLTTF MNAHFKAGNL KAALEVYRDF LVRGFEPDVV
TLSTLMDGLC KHGYLQDARG YFCREKANEI SYTVLIDGIC KEGQLDEVEM VFKEMSDAGF
VPDKYMYTSW IAELCKQGKL VEAFMLKNKM VQEGVEPDLL TYSSIIFGLA MKGLMLEAKH
VFDDMLKRGI SPDSAVYDIL IKGYLKDGNE VAVLGLYDEM RKKGLKVPTV EAEFTGRGDL
RCGEYVTLCR VGDAGHKDGS PVKHQLSSKA PYARIIIRFE TMYIAVLFAL KSGRNL
//
