ID A0A2P5VZ85_GOSBA Unreviewed; 1094 AA.
AC A0A2P5VZ85;
DT 23-MAY-2018, integrated into UniProtKB/TrEMBL.
DT 23-MAY-2018, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE RecName: Full=CCHC-type domain-containing protein {ECO:0000259|PROSITE:PS50158};
GN ORFNames=GOBAR_AA36567 {ECO:0000313|EMBL:PPR84150.1};
OS Gossypium barbadense (Sea-island cotton) (Egyptian cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=3634 {ECO:0000313|EMBL:PPR84150.1, ECO:0000313|Proteomes:UP000239757};
RN [1] {ECO:0000313|EMBL:PPR84150.1, ECO:0000313|Proteomes:UP000239757}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Xinhai21 {ECO:0000313|Proteomes:UP000239757};
RC TISSUE=Leaf {ECO:0000313|EMBL:PPR84150.1};
RA Chen X., Liu X., Zhao B., Zheng H., Hu Y., Lu G., Yang C., Chen J.,
RA Shan C., Zhang L., Zhou Y., Wang L., Guo W., Bai Y., Ruan J., Shangguan X.,
RA Mao Y., Jiang J., Zhu Y., Lei J., Kang H., Chen S., He X., Wang R.,
RA Wang Y., Chen J., Wang L., Yu S., Wang B., Wei J., Song S., Lu X., Gao Z.,
RA Gu W., Deng X., Ma D., Wang S., Liang W., Fang L., Cai C., Zhu X., Zhou B.,
RA Zhang Y., Chen Z., Xu S., Zhu R., Wang S., Zhang T., Zhao G.;
RT "Genome of allotetraploid Gossypium barbadense reveals genomic plasticity
RT and fiber elongation in cotton evolution.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; KZ670000; PPR84150.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2P5VZ85; -.
DR Proteomes; UP000239757; Unassembled WGS sequence.
DR GO; GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR CDD; cd18673; PIN_XRN1-2-like; 1.
DR Gene3D; 1.25.40.1050; -; 1.
DR Gene3D; 3.40.50.12390; -; 2.
DR InterPro; IPR027073; 5_3_exoribonuclease.
DR InterPro; IPR041412; Xrn1_helical.
DR InterPro; IPR004859; Xrn1_N.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR12341:SF41; 5'-3' EXORIBONUCLEASE 1; 1.
DR PANTHER; PTHR12341; 5'->3' EXORIBONUCLEASE; 1.
DR Pfam; PF17846; XRN_M; 1.
DR Pfam; PF03159; XRN_N; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Reference proteome {ECO:0000313|Proteomes:UP000239757};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 262..276
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 138..157
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 418..478
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 887..956
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 499..526
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 440..469
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 907..936
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1094 AA; 124589 MW; 00E46C3D604877FB CRC64;
MGVPAFYKWL AEKYPLILVD VIEEVPEMVD GVTIAVDTSK PNPNRIEFDN LYLDMNGIIH
PCFHPEDRSS PRTFDEVFRR IFEYIDRLFI MVRPRKLLFM AIDGVAPRAK MNQQRSRRFR
AAKDAAEAAA EEARLREEFE REGKRLPPKD ETQLSDSNVI TPGTSFMAVL SIALQYYIHL
RLNYDPGWKN IKVILSDANV PGEGEHKIMS YIRLQKNLPG FDPNTCHCLY GLDADLIMLA
LATHEVHFSI LREIIFTPGE DKCFLCGQMG HIAAKCDGTA KRKSGEFDEK GDRKNVARKP
YQFLNIWTLR EYLEHEMRIS NSPFEIDLER IVDDFIFMCF FVGNDFLPHM PTLEIREGAI
DLLMTIYKKE FRRMGGYLTD GSKPKLSLVE HFIQAVGSYE EQIFRKRALL HQRQAERIKR
GKAQAGGGDD AEPQVQPDSI VPVTRFNGSR LASGSSPAPF QQTMESNGDE SSGRPHKVRR
LNSGVTIDAA IVEAEDSIES DMLENKEELE AKLKELIHNK TDVFNSKDSK EDKIKLGEPG
WKERYYQEKF LAETPEEMET TRKDVVLKFT EGLCWVMHYY YEGVCSWRWF YPYHYAPFAS
DLKDLGQLNI QFELGSPFKP FNQLLGVFPA ASSHALPEQY RKLMTDPNSP IIDFYPTDFE
VDMDGKRFSW QGIAKLPFID EERLLTEVAK IEHTLTEEEA RRNSTMCDML FVAASHRLSE
QIFSLDNRCK RLTERQQVEV EEVKPDLSDG MNGYIFPCAG DTHPPIFRSP IKDMEDILAN
EVICCIYRTP KAHKHIPRPP AGVIFPPKMI QLSDLKPKPL LWHEDSGRRP FQNGRFAAAR
HLVEGSMLKS PVERYNPPGS ISGRKLGEAS HRLIANSLKK LKVDRTGFSN NVQAPPPSIA
TAPHIPPFNS HVNNGSLNQG QAVVAPSEQD YSRAGSQKQP RRAPPEHDSR AGYPLSQNLP
FDFSNAQSYY PYPICVPGSY LHYPPNHQNG GVRLITSPME QISAVPEPQP DLSGKKRRYN
TRYQANLRYQ ANLSGSYPQC GGIMAPQGDL NAALGFFYLG GRPKGDFYSF MLSSNFQIRF
IFIFLPGIFS KSKL
//
