ID A0A2P6RGZ9_ROSCH Unreviewed; 623 AA.
AC A0A2P6RGZ9;
DT 23-MAY-2018, integrated into UniProtKB/TrEMBL.
DT 23-MAY-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE RecName: Full=RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767};
GN ORFNames=RchiOBHm_Chr3g0494481 {ECO:0000313|EMBL:PRQ45701.1};
OS Rosa chinensis (China rose).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis;
OC Rosa.
OX NCBI_TaxID=74649 {ECO:0000313|EMBL:PRQ45701.1, ECO:0000313|Proteomes:UP000238479};
RN [1] {ECO:0000313|EMBL:PRQ45701.1, ECO:0000313|Proteomes:UP000238479}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Old Blush {ECO:0000313|Proteomes:UP000238479};
RA Bendahmane M.;
RT "The Rosa genome provides new insights in the design of modern roses.";
RL Nat. Genet. 0:0-0(2018).
CC -!- FUNCTION: Sigma factors are initiation factors that promote the
CC attachment of plastid-encoded RNA polymerase (PEP) to specific
CC initiation sites and are then released.
CC {ECO:0000256|PIRNR:PIRNR000767}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000256|PIRNR:PIRNR000767}.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788, ECO:0000256|PIRNR:PIRNR000767}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PRQ45701.1}.
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DR EMBL; PDCK01000041; PRQ45701.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2P6RGZ9; -.
DR STRING; 74649.A0A2P6RGZ9; -.
DR EnsemblPlants; PRQ45701; PRQ45701; RchiOBHm_Chr3g0494481.
DR Gramene; PRQ45701; PRQ45701; RchiOBHm_Chr3g0494481.
DR OMA; PANEEFE; -.
DR OrthoDB; 33789at2759; -.
DR Proteomes; UP000238479; Chromosome 3.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-UniRule.
DR GO; GO:0071482; P:cellular response to light stimulus; IEA:UniProt.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:UniProtKB-UniRule.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR016262; RNA_pol_sigma_SigB/C/D/F.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF57; RNA POLYMERASE SIGMA FACTOR SIGB; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PIRSF; PIRSF000767; RNA_pol_sigma_SigB/C/D; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00716; SIGMA70_2; 1.
PE 3: Inferred from homology;
KW Chloroplast {ECO:0000256|PIRNR:PIRNR000767};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PIRNR:PIRNR000767};
KW Plastid {ECO:0000256|PIRNR:PIRNR000767};
KW Reference proteome {ECO:0000313|Proteomes:UP000238479};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082,
KW ECO:0000256|PIRNR:PIRNR000767};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000767};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000767}.
FT DOMAIN 582..608
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00716"
SQ SEQUENCE 623 AA; 69126 MW; B168F2ABE4D87585 CRC64;
MSILSSSSSL SVGYCDAQKH ANNVSSSSSS SSSSLICCSF LTPLSLPHPK NKNKKKASGA
NNLFDDIAMG FQAKARYPIS FRAQYMLSST TAHSTSTGTA NLLDMEELRL PSLEVNSDSL
IANRPWTYTG AIGPPTEANY GAALATETLL TSEEAVIAAA AAEAVTLAKA ALKVAKDVAL
LVTNNHYTKA ESLSPVSRGT DAFHISWAQH LETEQTLRIG DSMASETALM EDHFIQIAIK
ESEDVEPANE EFELLQEQLS NGIAARSRRQ TERKARRARA AEKAAASVVS VKSGSTSRKK
RASLQDVDHS DPLRYLRTTT HTSRLLTATE EIELSEGIQE LLKLEKLQED LAQRCGTQPT
FAQWAAAAGV DQKTLRKRVN YGIMCKDKMI KSNIRLVISI AKNYQGAGMN LQDLVQEGCR
GLVRGAEKFD ASKGFKFSTY AHWWIKQAVR KSLSDQSRTI RLPFHMVEAT YRVREAKKQL
YSVNGRHPND EEVAEATGLS MKRLAAVLLT PKAPRSLEQK IGINQNLKPS DVIADPDAET
AEDLLMKKFM RQDLEKVLDS LNPREKQVIR WRFGMEDGRM KTLQEIGELM GVSRERIRQI
ESCAFRKLKN KKRTKHLQQY VLS
//
