ID A0A2P6RQ79_ROSCH Unreviewed; 1715 AA.
AC A0A2P6RQ79;
DT 23-MAY-2018, integrated into UniProtKB/TrEMBL.
DT 23-MAY-2018, sequence version 1.
DT 24-JAN-2024, entry version 29.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=RchiOBHm_Chr2g0112281 {ECO:0000313|EMBL:PRQ48577.1};
OS Rosa chinensis (China rose).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis;
OC Rosa.
OX NCBI_TaxID=74649 {ECO:0000313|EMBL:PRQ48577.1, ECO:0000313|Proteomes:UP000238479};
RN [1] {ECO:0000313|EMBL:PRQ48577.1, ECO:0000313|Proteomes:UP000238479}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Old Blush {ECO:0000313|Proteomes:UP000238479};
RA Bendahmane M.;
RT "The Rosa genome provides new insights in the design of modern roses.";
RL Nat. Genet. 0:0-0(2018).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PRQ48577.1}.
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DR EMBL; PDCK01000040; PRQ48577.1; -; Genomic_DNA.
DR STRING; 74649.A0A2P6RQ79; -.
DR EnsemblPlants; PRQ48577; PRQ48577; RchiOBHm_Chr2g0112281.
DR Gramene; PRQ48577; PRQ48577; RchiOBHm_Chr2g0112281.
DR OMA; HDGFPLC; -.
DR OrthoDB; 443445at2759; -.
DR Proteomes; UP000238479; Chromosome 2.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd20335; BRcat_RBR; 1.
DR CDD; cd17917; DEXHc_RHA-like; 1.
DR CDD; cd22585; Rcat_RBR_DEAH12-like; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 1.20.120.1750; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR002867; IBR_dom.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR044066; TRIAD_supradom.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF81; ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF01485; IBR; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00647; IBR; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF57850; RING/U-box; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51873; TRIAD; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000313|EMBL:PRQ48577.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000313|EMBL:PRQ48577.1};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000238479};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 263..427
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 455..621
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT DOMAIN 1502..1710
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS51873"
FT DOMAIN 1506..1548
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT REGION 1..30
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1715 AA; 194422 MW; 7F768AE16ACA010C CRC64;
MRGSKPAGMS EQRRFYPQPG SHPRAAVPRR PLPRIQRPNF IVYLLSDKRD LRRPDIEAVI
NQCRAKPENF RVSPENNTVA SMFYAQWYDA LEAMVWLWES RLDRVHNFMP KLDANDSVST
PSDSVELEDR LRALFAGRIK QLIDGDEVKK CEAKRQILAR EYDRVRKLAK RPQRNWEDLP
EKEKRCRVEL ELVESRIREF RSAMNCLLAH VEGKELEEYG EEGLKLFKFG EIRPWSRIQR
LMVRECRRLD EGLPIYAHRQ QILEQITNQQ VMVLIGETGS GKSTQLVQFL ADSGIAADKS
IVCTQPRKIA ANSLAKRVKE ESSGCFYGES TVTSYQTSSG QQLTSKVTYM TDHCLLQYYM
KDRNMTMISC IIVDEAHERT LSTDLLLALI KDLLGRRHQL RLIIMSATAD AEVLSHYFFN
CKIFHVVGRN FPVDVKYAPS FTDGTASNVA SYVSDVMRVA REIHKNEKQG TILAFLTSQM
EVEWVCEKFI TPGTIALPLH GKLSFEEQSN VFQNHPGKRK IIFATNLAET SLTIPGVKYV
IDSGMVKESK FEPGSGMNVL RVCRISQSSA KQRTGRAGRT EPGICYRLYS EYDFQAMPPC
QEPEIRRVHL GVAVLRILAL GVKNLKEFEF IDAPCSEAID MAMRNLVQLG AVKQNNDVYE
LTQEGRDLVK LGVEPRLGKL ILGCYHHNLR KEGLVLAAVM ANASSIFCRV GNDEEKLRSD
CFKVQFCHRD GDLFTLLSVY KIWEALPRER RNTWCWENSI NAKTMRRCQD TVLELESCLK
HELNRIIPCS WRWNAHVSTD CDIYLKKVIL SSLAENVAMF SGYDQVGYEV ALTGQHVRLH
PSCSLLVFGQ KPSWVVFGEL LSSSNQYLAC VTTIDFNSLS TLDPPPVFDV SKMEGRKLQL
KVLTGFGSCL LKRFCGKGNS YLLHLVSRVR TICNDELISI KVDYYQNEIM VFATPHNMDR
VINLVSDALE CEKRWLRNEC LEKCLYHGSG GLPPVALFGA GAEIKHLELH KRCLTVDVFH
SKLDDMDDKE FLTELEESAS GSICGHHKFP GTGQENVDKG KGARLTFFTP DAAQKAVELN
DSEFNGSILK VVPSQVGGDH KVYPLLAVRA KILWPRRQSH GFAIVKCDMD DIYPMLADFS
NLVVLGRNIR CQPSKRYMDS VVISGLNRDL SEKEILDVLR TATSRTILDF FLVRGDAVEN
PPCGACEEAL LKEISPYMPK RYSHSSCTVQ VFQPEPKSHF MRALITFDGR LHLEAAKALE
QLEGKVLPGF LPWQKMECQQ LFHSSLSCPG PVYRVIKKQL DPLLESFTHL KGVECNLEEY
PNGSCRVKIS ANATKTIADL RRRVEELVRG KTIDHPSLTA TVLQLLFSRD GTSLMNSLQR
ETGTYIIFDR HKLNVQVFGE AHKVDMVKQK LVESLLNLHE SKVLEIRLQG NALPPELMKE
VVRRFGPDLR GLKEKVPGAD FTLNVRRQSI LIHGSKELKQ KVEEIIDETA HMAGSLTKRI
NREADCPICL CDVEDGYRLE DCGHLFCRSC LVEQCESAIN NHDSFPLCCT HEGCRSPILI
TDLRSLLSIE KLEDLFRASV GSYVASSCGT YRFCPSPDCA SVYQVAAPGT EGEPFVCGAC
YAETCTMCHL EHHPYMSCKQ YKNFKEDPDS SLKEWCKGKE HVKSCPVCRY TIEKIDGCNH
IECRCGKHIC WVCLAYYGSS DECYGHLRSV HLAII
//
