ID A0A2P6VKU5_9CHLO Unreviewed; 858 AA.
AC A0A2P6VKU5;
DT 23-MAY-2018, integrated into UniProtKB/TrEMBL.
DT 23-MAY-2018, sequence version 1.
DT 24-JAN-2024, entry version 21.
DE SubName: Full=Branchpoint-bridging-like {ECO:0000313|EMBL:PSC74708.1};
GN ORFNames=C2E20_2147 {ECO:0000313|EMBL:PSC74708.1};
OS Micractinium conductrix.
OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Trebouxiophyceae;
OC Chlorellales; Chlorellaceae; Chlorella clade; Micractinium.
OX NCBI_TaxID=554055 {ECO:0000313|EMBL:PSC74708.1, ECO:0000313|Proteomes:UP000239649};
RN [1] {ECO:0000313|EMBL:PSC74708.1, ECO:0000313|Proteomes:UP000239649}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SAG 241.80 {ECO:0000313|EMBL:PSC74708.1,
RC ECO:0000313|Proteomes:UP000239649};
RX PubMed=29178410; DOI=10.1111/tpj.13789;
RA Arriola M.B., Velmurugan N., Zhang Y., Plunkett M.H., Hondzo H.,
RA Barney B.M.;
RT "Genome sequences of Chlorella sorokiniana UTEX 1602 and Micractinium
RT conductrix SAG 241.80: implications to maltose excretion by a green alga.";
RL Plant J. 93:566-586(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the BBP/SF1 family.
CC {ECO:0000256|ARBA:ARBA00010382}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PSC74708.1}.
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DR EMBL; LHPF02000004; PSC74708.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2P6VKU5; -.
DR STRING; 554055.A0A2P6VKU5; -.
DR Proteomes; UP000239649; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd02395; KH-I_BBP; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR Gene3D; 6.10.140.1790; -; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR045071; BBP-like.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR032570; SF1-HH.
DR InterPro; IPR047086; SF1-HH_sf.
DR InterPro; IPR007148; SSU_processome_Utp12.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR11208; RNA-BINDING PROTEIN RELATED; 1.
DR PANTHER; PTHR11208:SF45; SPLICING FACTOR 1; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF00076; RRM_1; 2.
DR Pfam; PF16275; SF1-HH; 1.
DR Pfam; PF04003; Utp12; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00322; KH; 1.
DR SMART; SM00360; RRM; 2.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR PROSITE; PS50084; KH_TYPE_1; 1.
DR PROSITE; PS50102; RRM; 2.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000239649};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00047}.
FT DOMAIN 298..313
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 390..468
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 490..570
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..63
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 360..384
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 462..484
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 566..652
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 673..693
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..15
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 20..35
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 36..57
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 603..652
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 858 AA; 91278 MW; 28A5FFEF35B3095B CRC64;
MEAPRGRRRH RWGLLPEAAL PKPEPAPAAE PAPAPEEPKP TRKRKSRWED KGSAADDSSG
AGKELALFPE KVVLSNGLQV VLPPVFTGRV AGGDPEVLEL HKQLADLNRK LVSGTVELPP
EGERSPSPPP VYDVMGMRLN TREVRYKEKL QKNKNKLIEQ LIQRDPSFKP PPDYRPERKW
KKIFIPFKQY PGYNFIGLII GPRGNTQKRM QAETNTKIAI RGRGSVKEGA SRDPKYDYGE
DEELHVLITG DKQEDVDAAA AMIQRLLQPL DEEMNEHKKL QLRELATING TLKDEEFCFV
CGETGHVQSD CPKKAVDVYR LPDQMQSKVE EMYARDVARM NPGEAVKMDS EYKSFLAELG
GGPPPEEGGG MRGGHGMRPS RPGDDLPDTC KLYIGNLSPA VNDSLLRQMF EPFGTVLYAG
VVYDKETNTS RGFGFLHMAD EQSATTAREG MNGKVVDGRS LNVRAKGDNS GPRRGGLGAS
RPDDDLPPEC KLYVGCLPNN VDEHALTREF SRFGAVLSAR VITDRDTGRP KGFAFVSMSD
PAGARNAMQG LDGFPGFDSH RPMVVRQAGT GDTGPPRGMR RDGPPRGPPM GGMGGGFPGG
PGGPGGPGGP PPPGGFYPPP PGPQFGGPNY PPPPGHGGPP FGGPPSGPYG FPPPPMGMGM
GMGMGMGMPP FGGPGGYPPP PGSPPSTAAR RGGGNACMRA SAAARFFCFS YNCKMSSVAA
ALSQALQVRD ESALDTCLSV QENSVISSSV ARLSPVLAGT LLEALVGRLH RQPQQAARLV
PWLRSLLLSH GAALASTPAG QAALQLAQDT LQERTSSYSS LLALSGRLQV LQAAADGGGG
AGGAGSASAP QVVFTHSG
//
