ID A0A2P8KS96_9BURK Unreviewed; 785 AA.
AC A0A2P8KS96;
DT 23-MAY-2018, integrated into UniProtKB/TrEMBL.
DT 23-MAY-2018, sequence version 1.
DT 24-JAN-2024, entry version 22.
DE SubName: Full=RNA-binding transcriptional accessory protein {ECO:0000313|EMBL:PSL85835.1};
GN ORFNames=C7T35_04235 {ECO:0000313|EMBL:PSL85835.1}, GXN78_27685
GN {ECO:0000313|EMBL:NDZ16595.1};
OS Variovorax sp. WS11.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Variovorax.
OX NCBI_TaxID=1105204 {ECO:0000313|EMBL:PSL85835.1, ECO:0000313|Proteomes:UP000241151};
RN [1] {ECO:0000313|EMBL:PSL85835.1, ECO:0000313|Proteomes:UP000241151}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=WS11 {ECO:0000313|EMBL:PSL85835.1,
RC ECO:0000313|Proteomes:UP000241151};
RA Crombie A.T., Mejia-Florez N.L., Murrell C.;
RT "Isoprene degraders from the Poplar phyllosphere.";
RL Submitted (MAR-2018) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:NDZ16595.1, ECO:0000313|Proteomes:UP000479786}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=WS11 {ECO:0000313|EMBL:NDZ16595.1,
RC ECO:0000313|Proteomes:UP000479786};
RA Dawson R.A., Larke-Mejia N.L., Crombie A.T., Ul-Haque M.F., Murrell J.C.;
RT "Isoprene oxidation by the Gram negative model bacterium Variovorax sp.
RT WS11.";
RL Submitted (FEB-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PSL85835.1}.
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DR EMBL; JAAGOW010000003; NDZ16595.1; -; Genomic_DNA.
DR EMBL; PXZZ01000004; PSL85835.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2P8KS96; -.
DR OrthoDB; 9804714at2; -.
DR Proteomes; UP000241151; Unassembled WGS sequence.
DR Proteomes; UP000479786; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd05685; S1_Tex; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR044146; S1_Tex.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12836; HHH_3; 1.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
FT DOMAIN 665..734
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT REGION 736..785
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 785 AA; 85660 MW; 34DEAF55054E61B5 CRC64;
MQKIIRQLAA EIKVGEHQVK AAVDLLDGGA TVPFIARYRK EATDGLDDIQ LRELEARLAY
LRELEERRAA VRKSIEEQGK LTPELRAAID AAPTKQELED LYLPYKPKRR TKGQMAREAG
IEPLADKLFA DPTLNPAEEA AAFVKPAADG LDFSTVQLVL DGVRDILSER WAEDAALVQR
LREWLWAEGL FKSSLMAGKD ENNADVAKFR DYFDYDEPIG RVPSHRALAV FRGRALDILD
AKLVLPVEPE PGKPSIAEGK IALHLGWSHA GRAADDLIRK CVAWTWRVKL SLSTERDLFS
RLREEAEKVA IKVFADNLRD LLLAAPAGPR VVMGLDPGIR TGVKVAVVDA TGKLVDTGTV
FPHEPRRDWE GSLHTLGKLC AKHSVNLIAI GNGTASRETD KLAADLIKLL AKMAEQAGAP
PLKVEKVVVS EAGASVYSAS EFASQEMPDV DVSLRGAASI ARRLQDPLAE LVKIDPKSIG
VGQYQHDVNQ SELARTLHAV VEDCVNSVGV DLNTASVPLL SRVSGLSAGV AKAVVRWREA
NGAFATRKQL LEVTGFGGKT FEQSAGFLRI RGGANPLDMT GVHPETYPVV EQMIEKTGKP
IDALMGRAEM LKTLKPELFA NEKFGVITVK DILGELEKPG RDPRPDFKVA RFNEGVEDIK
DLVEGMVLEG TVSNVAQFGA FVDLGVHQDG LVHVSQLSHK FVNDAREVVK TGDIVKVKVM
EVDVARKRIG LSMKLDAAPA RRDGPRENRF EGAGRGQQGP RRDNAPQPAG QMASAFAKLQ
GLRKP
//
