ID A0A2R6R1J8_ACTCC Unreviewed; 301 AA.
AC A0A2R6R1J8;
DT 20-JUN-2018, integrated into UniProtKB/TrEMBL.
DT 20-JUN-2018, sequence version 1.
DT 28-JUN-2023, entry version 16.
DE RecName: Full=GAGA-binding transcriptional activator {ECO:0000256|RuleBase:RU367160};
GN ORFNames=CEY00_Acc11145 {ECO:0000313|EMBL:PSS19126.1};
OS Actinidia chinensis var. chinensis (Chinese soft-hair kiwi).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; Ericales; Actinidiaceae; Actinidia.
OX NCBI_TaxID=1590841 {ECO:0000313|EMBL:PSS19126.1, ECO:0000313|Proteomes:UP000241394};
RN [1] {ECO:0000313|EMBL:PSS19126.1, ECO:0000313|Proteomes:UP000241394}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Red5 {ECO:0000313|Proteomes:UP000241394};
RC TISSUE=Young leaf {ECO:0000313|EMBL:PSS19126.1};
RA Pilkington S., Crowhurst R., Hilario E., Nardozza S., Fraser L., Peng Y.,
RA Gunaseelan K., Simpson R., Tahir J., Deroles S., Templeton K., Luo Z.,
RA Davy M., Cheng C., Mcneilage M., Scaglione D., Liu Y., Zhang Q., Datson P.,
RA De Silva N., Gardiner S., Bassett H., Chagne D., Mccallum J., Dzierzon H.,
RA Deng C., Wang Y.-Y., Barron N., Manako K., Bowen J., Foster T., Erridge Z.,
RA Tiffin H., Waite C., Davies K., Grierson E., Laing W., Kirk R., Chen X.,
RA Wood M., Montefiori M., Brummell D., Schwinn K., Catanach A., Fullerton C.,
RA Li D., Meiyalaghan S., Nieuwenhuizen N., Read N., Prakash R., Hunter D.,
RA Zhang H., Mckenzie M., Knabel M., Harris A., Allan A., Chen A., Janssen B.,
RA Plunkett B., Dwamena C., Voogd C., Leif D., Lafferty D., Souleyre E.,
RA Varkonyi-Gasic E., Gambi F., Hanley J., Yao J.-L., Cheung J., David K.,
RA Warren B., Marsh K., Snowden K., Lin-Wang K., Brian L.,
RA Martinez-Sanchez M., Wang M., Ileperuma N., Macnee N., Campin R.,
RA Mcatee P., Drummond R., Espley R., Ireland H., Wu R., Atkinson R.,
RA Karunairetnam S., Bulley S., Chunkath S., Hanley Z., Storey R.,
RA Thrimawithana A., Thomson S., David C., Testolin R.;
RT "An improved, manually edited Actinidia chinensis var. chinensis
RT (kiwifruit) genome highlights the challenges associated with draft genomes
RT and gene prediction in plants.";
RL Submitted (JUL-2017) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000241394}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Red5 {ECO:0000313|Proteomes:UP000241394};
RX PubMed=29661190; DOI=10.1186/s12864-018-4656-3;
RA Pilkington S.M., Crowhurst R., Hilario E., Nardozza S., Fraser L., Peng Y.,
RA Gunaseelan K., Simpson R., Tahir J., Deroles S.C., Templeton K., Luo Z.,
RA Davy M., Cheng C., McNeilage M., Scaglione D., Liu Y., Zhang Q., Datson P.,
RA De Silva N., Gardiner S.E., Bassett H., Chagne D., McCallum J.,
RA Dzierzon H., Deng C., Wang Y.Y., Barron L., Manako K., Bowen J.,
RA Foster T.M., Erridge Z.A., Tiffin H., Waite C.N., Davies K.M.,
RA Grierson E.P., Laing W.A., Kirk R., Chen X., Wood M., Montefiori M.,
RA Brummell D.A., Schwinn K.E., Catanach A., Fullerton C., Li D.,
RA Meiyalaghan S., Nieuwenhuizen N., Read N., Prakash R., Hunter D., Zhang H.,
RA McKenzie M., Knabel M., Harris A., Allan A.C., Gleave A., Chen A.,
RA Janssen B.J., Plunkett B., Ampomah-Dwamena C., Voogd C., Leif D.,
RA Lafferty D., Souleyre E.J.F., Varkonyi-Gasic E., Gambi F., Hanley J.,
RA Yao J.L., Cheung J., David K.M., Warren B., Marsh K., Snowden K.C.,
RA Lin-Wang K., Brian L., Martinez-Sanchez M., Wang M., Ileperuma N.,
RA Macnee N., Campin R., McAtee P., Drummond R.S.M., Espley R.V.,
RA Ireland H.S., Wu R., Atkinson R.G., Karunairetnam S., Bulley S.,
RA Chunkath S., Hanley Z., Storey R., Thrimawithana A.H., Thomson S.,
RA David C., Testolin R., Huang H., Hellens R.P., Schaffer R.J.;
RT "A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome
RT highlights the challenges associated with draft genomes and gene prediction
RT in plants.";
RL BMC Genomics 19:257-257(2018).
CC -!- FUNCTION: Transcriptional regulator that specifically binds to GA-rich
CC elements (GAGA-repeats) present in regulatory sequences of genes
CC involved in developmental processes. {ECO:0000256|RuleBase:RU367160}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|RuleBase:RU367160}.
CC -!- SIMILARITY: Belongs to the BBR/BPC family.
CC {ECO:0000256|ARBA:ARBA00007911, ECO:0000256|RuleBase:RU367160}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PSS19126.1}.
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DR EMBL; NKQK01000010; PSS19126.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2R6R1J8; -.
DR STRING; 1590841.A0A2R6R1J8; -.
DR EnsemblPlants; PSS19126; PSS19126; CEY00_Acc11145.
DR Gramene; PSS19126; PSS19126; CEY00_Acc11145.
DR InParanoid; A0A2R6R1J8; -.
DR OMA; STIPHEA; -.
DR Proteomes; UP000241394; Chromosome lg10.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:UniProtKB-UniRule.
DR InterPro; IPR010409; GAGA-bd_tscrpt_act.
DR PANTHER; PTHR31421; -; 1.
DR PANTHER; PTHR31421:SF3; PROTEIN BASIC PENTACYSTEINE4; 1.
DR Pfam; PF06217; GAGA_bind; 1.
DR SMART; SM01226; GAGA_bind; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|RuleBase:RU367160};
KW Nucleus {ECO:0000256|RuleBase:RU367160};
KW Reference proteome {ECO:0000313|Proteomes:UP000241394};
KW Transcription {ECO:0000256|RuleBase:RU367160};
KW Transcription regulation {ECO:0000256|RuleBase:RU367160}.
FT REGION 151..185
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 49..80
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 301 AA; 33675 MW; 3F1161406796A7C7 CRC64;
MDDGGQRDHA RHRMDYYYKG GHIPWSMMPQ YQMNEANAIF MNKKIVHIIA EKDAAIEEMN
KAIAEKNAAL EERNEAFKQR DNAIAARDTA LRERDSAIAA LRFQENSMNG ILGYGIQRGT
KRAHHPTNYH PAPAAEVPIA SDEIVKSRQA KCAKGKKNVS PKVSKSPKKG KKVGEDLNRE
VTTNGSKAEW DAQDLDLINQ IDFDESSIAA PVCSCTGKPR QCYKWGNGGW QSSCCTTTLS
SYPLPQMPNK RHARMGGRKM SGSVFTRLLT RLASDGHDLS IPLDLKNFWA KHGTNRYITI
K
//
