ID A0A2S2DUZ5_9BACT Unreviewed; 199 AA.
AC A0A2S2DUZ5;
DT 18-JUL-2018, integrated into UniProtKB/TrEMBL.
DT 18-JUL-2018, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE RecName: Full=Probable endolytic peptidoglycan transglycosylase RlpA {ECO:0000256|HAMAP-Rule:MF_02071};
DE EC=4.2.2.- {ECO:0000256|HAMAP-Rule:MF_02071};
GN Name=rlpA {ECO:0000256|HAMAP-Rule:MF_02071};
GN ORFNames=EWU22_08335 {ECO:0000313|EMBL:TBH73669.1}, HME7025_01315
GN {ECO:0000313|EMBL:AWL09176.1};
OS Aquirufa nivalisilvae.
OC Bacteria; Bacteroidota; Cytophagia; Cytophagales; Cytophagaceae; Aquirufa.
OX NCBI_TaxID=2516557 {ECO:0000313|EMBL:AWL09176.1, ECO:0000313|Proteomes:UP000245468};
RN [1] {ECO:0000313|Proteomes:UP000245468}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=HME7025 {ECO:0000313|Proteomes:UP000245468};
RA Kim H., Kang H., Joh K.;
RT "Pseudarcicella sp. HME7025 Genome sequencing and assembly.";
RL Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AWL09176.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=HME7025 {ECO:0000313|EMBL:AWL09176.1};
RX PubMed=31433289;
RA Kim H., Kang H., Joh K.;
RT "Allopseudarcicella aquatilis gen. nov., sp. nov., isolated from
RT freshwater.";
RL Int. J. Syst. Evol. Microbiol. 69:3574-3580(2019).
RN [3] {ECO:0000313|EMBL:TBH73669.1, ECO:0000313|Proteomes:UP000292948}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=59G-WUEMPEL {ECO:0000313|EMBL:TBH73669.1,
RC ECO:0000313|Proteomes:UP000292948};
RA Pitt A.;
RT "Genome of a new Bacteroidetes strain.";
RL Submitted (FEB-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Lytic transglycosylase with a strong preference for naked
CC glycan strands that lack stem peptides. {ECO:0000256|HAMAP-
CC Rule:MF_02071}.
CC -!- SIMILARITY: Belongs to the RlpA family. {ECO:0000256|HAMAP-
CC Rule:MF_02071, ECO:0000256|RuleBase:RU003495}.
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DR EMBL; CP029346; AWL09176.1; -; Genomic_DNA.
DR EMBL; SEWX01000005; TBH73669.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2S2DUZ5; -.
DR KEGG; psez:HME7025_01315; -.
DR OrthoDB; 9779128at2; -.
DR Proteomes; UP000245468; Chromosome.
DR Proteomes; UP000292948; Unassembled WGS sequence.
DR GO; GO:0008932; F:lytic endotransglycosylase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0000270; P:peptidoglycan metabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd22268; DPBB_RlpA-like; 1.
DR Gene3D; 2.40.40.10; RlpA-like domain; 1.
DR HAMAP; MF_02071; RlpA; 1.
DR InterPro; IPR034718; RlpA.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR InterPro; IPR012997; RplA.
DR NCBIfam; TIGR00413; rlpA; 1.
DR PANTHER; PTHR34183; -; 1.
DR PANTHER; PTHR34183:SF1; ENDOLYTIC PEPTIDOGLYCAN TRANSGLYCOSYLASE RLPA; 1.
DR Pfam; PF03330; DPBB_1; 1.
DR SUPFAM; SSF50685; Barwin-like endoglucanases; 1.
PE 3: Inferred from homology;
KW Cell wall biogenesis/degradation {ECO:0000256|ARBA:ARBA00023316,
KW ECO:0000256|HAMAP-Rule:MF_02071};
KW Lipoprotein {ECO:0000313|EMBL:AWL09176.1};
KW Lyase {ECO:0000256|ARBA:ARBA00023239, ECO:0000256|HAMAP-Rule:MF_02071};
KW Reference proteome {ECO:0000313|Proteomes:UP000245468}.
FT DOMAIN 36..116
FT /note="RlpA-like protein double-psi beta-barrel"
FT /evidence="ECO:0000259|Pfam:PF03330"
FT REGION 170..199
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 199 AA; 23530 MW; 2E1D2B79A13DAD38 CRC64;
MTSFRIILFT LIYHFLFQGQ AQNLGDESYG IASYYSRSFY NKKTANQELL NRKEFTAAHR
IYPFNTLVEV TNLQNKKSVI VRINDRGPYK SGRIIDLTEI SAKHLNIRKI GLTKVRLKIV
GFENEQMLIP YQHLEMETSP KFSTKYYQKT RLKYKKKYRL KRHIRNRSYL VKGKKKGTVN
KNRKKKLTHA KKSSGRTSK
//
