ID   A0A2S5JKF6_9RHOB        Unreviewed;       577 AA.
AC   A0A2S5JKF6;
DT   18-JUL-2018, integrated into UniProtKB/TrEMBL.
DT   18-JUL-2018, sequence version 1.
DT   24-JAN-2024, entry version 15.
DE   SubName: Full=Murein L,D-transpeptidase YcbB/YkuD {ECO:0000313|EMBL:PPB81881.1};
GN   ORFNames=LV82_01098 {ECO:0000313|EMBL:PPB81881.1};
OS   Albidovulum inexpectatum.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC   Paracoccaceae; Albidovulum.
OX   NCBI_TaxID=196587 {ECO:0000313|EMBL:PPB81881.1, ECO:0000313|Proteomes:UP000239736};
RN   [1] {ECO:0000313|EMBL:PPB81881.1, ECO:0000313|Proteomes:UP000239736}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 12048 {ECO:0000313|EMBL:PPB81881.1,
RC   ECO:0000313|Proteomes:UP000239736};
RA   Goeker M.;
RT   "Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II
RT   (KMG-II): from individual species to whole genera.";
RL   Submitted (JAN-2018) to the EMBL/GenBank/DDBJ databases.
CC   -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC       {ECO:0000256|ARBA:ARBA00004752}.
CC   -!- SIMILARITY: Belongs to the YkuD family.
CC       {ECO:0000256|ARBA:ARBA00005992}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PPB81881.1}.
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DR   EMBL; PRDS01000002; PPB81881.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2S5JKF6; -.
DR   UniPathway; UPA00219; -.
DR   Proteomes; UP000239736; Unassembled WGS sequence.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR   GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR   CDD; cd16913; YkuD_like; 1.
DR   Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR   Gene3D; 1.10.101.10; PGBD-like superfamily/PGBD; 1.
DR   InterPro; IPR005490; LD_TPept_cat_dom.
DR   InterPro; IPR045380; LD_TPept_scaffold_dom.
DR   InterPro; IPR002477; Peptidoglycan-bd-like.
DR   InterPro; IPR036365; PGBD-like_sf.
DR   InterPro; IPR036366; PGBDSf.
DR   InterPro; IPR038063; Transpep_catalytic_dom.
DR   PANTHER; PTHR41533:SF2; BLR7131 PROTEIN; 1.
DR   PANTHER; PTHR41533; L,D-TRANSPEPTIDASE HI_1667-RELATED; 1.
DR   Pfam; PF01471; PG_binding_1; 1.
DR   Pfam; PF20142; Scaffold; 1.
DR   Pfam; PF03734; YkuD; 1.
DR   SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR   SUPFAM; SSF47090; PGBD-like; 1.
PE   3: Inferred from homology;
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000239736};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        18..38
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        45..63
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          90..225
FT                   /note="L,D-transpeptidase scaffold"
FT                   /evidence="ECO:0000259|Pfam:PF20142"
FT   DOMAIN          252..306
FT                   /note="Peptidoglycan binding-like"
FT                   /evidence="ECO:0000259|Pfam:PF01471"
FT   DOMAIN          337..497
FT                   /note="L,D-transpeptidase catalytic"
FT                   /evidence="ECO:0000259|Pfam:PF03734"
SQ   SEQUENCE   577 AA;  64826 MW;  2EDE7BCD790BA123 CRC64;
     MPVDGLGHRN ARESNHKWFS GAGMSLGLIG FLSTRGWVVR RVSRAAAIAL GVALGAGIVQ
     PVAAQEEKAL RVPDLSYRLA LAEAAAGRPA IARFYREHDY AALWTAPEAQ VRRGALISAL
     ERAEEHGLPS FAPRSRDLLA RLGAMQTQAD RAQLEVAMSA AFLDYARALH SGVLTPAKVD
     PGIVREVPRL DPLKLLQDFA RSEPRAYLRA LAPQVPQYDQ LRRAMLDLRE VIAAGGWGPA
     VPGGKKLAPG DTGARVVALR DRLIRMDYLR PTLSAVYERE IQKAVQQFQL DHGLTPDGIA
     GPSTLAEINV GPEERLRSVL VALERLRWMN GLDLGERHVW VNIPDFTAKV IDDGKQRFET
     ITVVGKDQPD RRSPEFSDLM EYMVINPTWN VPRSIAVKEY LPKLKKNPNA VRHLRITDRR
     GRVIDRSKVD FTQFTARNFP FNMSQPPDDD NALGLVKFMF PNPWNIYLHD TPSKSLFSRE
     VRAFSHGCIR LGQPFEFAYV LLERQSDDPK VEFHRHLRTG RETTVPLEQP VPVHIVYFTA
     WPDRFGQVRF RRDVYGRDGR IFDALRAAGL EFDALRG
//