ID A0A2S9I4P8_9GAMM Unreviewed; 716 AA.
AC A0A2S9I4P8;
DT 18-JUL-2018, integrated into UniProtKB/TrEMBL.
DT 18-JUL-2018, sequence version 1.
DT 27-MAR-2024, entry version 15.
DE SubName: Full=Lysine decarboxylase LdcC {ECO:0000313|EMBL:PRD12769.1};
DE EC=4.1.1.18 {ECO:0000313|EMBL:PRD12769.1};
GN ORFNames=CQW29_25010 {ECO:0000313|EMBL:PRD12769.1};
OS Pantoea coffeiphila.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC Erwiniaceae; Pantoea.
OX NCBI_TaxID=1465635 {ECO:0000313|EMBL:PRD12769.1, ECO:0000313|Proteomes:UP000239181};
RN [1] {ECO:0000313|EMBL:PRD12769.1, ECO:0000313|Proteomes:UP000239181}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=342 {ECO:0000313|EMBL:PRD12769.1,
RC ECO:0000313|Proteomes:UP000239181};
RA Siqueira K.A., Liotti R.G., Mendes T.A., Soares M.A.;
RT "Draft genome of two endophytic bacteria isolated from 'guarana' Paullinia
RT cupana (Mart.) Ducke.";
RL Submitted (OCT-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933};
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-I family.
CC {ECO:0000256|ARBA:ARBA00010671}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PRD12769.1}.
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DR EMBL; PDET01000027; PRD12769.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2S9I4P8; -.
DR OrthoDB; 9761189at2; -.
DR Proteomes; UP000239181; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0008923; F:lysine decarboxylase activity; IEA:UniProtKB-EC.
DR GO; GO:0006520; P:amino acid metabolic process; IEA:InterPro.
DR CDD; cd00615; Orn_deC_like; 1.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR Gene3D; 3.90.100.10; Orn/Lys/Arg decarboxylase, C-terminal domain; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR InterPro; IPR005308; OKR_de-COase_N.
DR InterPro; IPR011193; Orn/lys/arg_de-COase.
DR InterPro; IPR000310; Orn/Lys/Arg_deCO2ase_major_dom.
DR InterPro; IPR008286; Prn/Lys/Arg_de-COase_C.
DR InterPro; IPR036633; Prn/Lys/Arg_de-COase_C_sf.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR PANTHER; PTHR45229:SF3; BIODEGRADATIVE ARGININE DECARBOXYLASE; 1.
DR PANTHER; PTHR45229; CONSTITUTIVE ORNITHINE DECARBOXYLASE; 1.
DR Pfam; PF01276; OKR_DC_1; 1.
DR Pfam; PF03711; OKR_DC_1_C; 1.
DR Pfam; PF03709; OKR_DC_1_N; 1.
DR PIRSF; PIRSF009393; Orn_decarb; 1.
DR SUPFAM; SSF55904; Ornithine decarboxylase C-terminal domain; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
DR PROSITE; PS00703; OKR_DC_1; 1.
PE 3: Inferred from homology;
KW Lyase {ECO:0000313|EMBL:PRD12769.1};
KW Pyridoxal phosphate {ECO:0000256|ARBA:ARBA00022898,
KW ECO:0000256|PIRSR:PIRSR009393-1}.
FT DOMAIN 362..376
FT /note="Orn/Lys/Arg decarboxylases family 1 pyridoxal-P
FT attachment site"
FT /evidence="ECO:0000259|PROSITE:PS00703"
FT MOD_RES 367
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR009393-1"
SQ SEQUENCE 716 AA; 80824 MW; A1C0345EF1207C7C CRC64;
MNIIAIVGPH NVFYKDEPIR QLDAALQLQG FQTIYPHDAA DLLKLIEHNP RISGVIFDWD
EHSFELCSEI NQLNEYLPLY AFINTHSTMD VSINEMRMAI WFFEYALNAA EDIAQRIRQY
TDEYLENITP PLTRALFTYV KEGKYTFCTP GHMAGTAFQK SPVGCLFYDF FGANTLKADI
SISVTELGSL LDHTGPHLEA EEYVARTFGA EQSYMVTNGT STSNKIVGMY AAPAGSTVLV
DRNCHKSLTH LLMMSDVIPI WLKPTRNALG ILGGIPKREF TRESIEQKVA QTPRASWPVH
AVITNSTYDG LLYNTQYIKE TLDVPSIHFD SAWVPYTNFH PIYSGLSGMS GERTAGKVIY
ETQSTHKLLA AFSQASLIHI KGDYDEQTFN EVYMMHTTTS PNYSIVASIE TAAAMLRGNP
GKRLINRSVE RALHFRREIQ RLREESDGWF FDIWQPEGID EPECWPIQPG EEDWHGFRDA
DADHMYLDPI KVTILTPGMS ELGEMAKEGI PAALVAKFLD QRGIVVEKTG PYNLLFLFSI
GIDKTKAMSV LRGLTEFKRA YDLNLRVKNM LPDLYAEDPD FYRNMRIQDL AQGIHSLICQ
HDLPRLMLQA FAVLPEMKLT PHQMFQQQVK GNVETVDISE LVGRISANMI LPYPPGVPVV
MPGEMITAES RAVLDFLLML CSVGERYPGF ETDIHGATLT EDGQYLVRVL KDDAVI
//
