ID   A0A2T5H693_9PSED        Unreviewed;       905 AA.
AC   A0A2T5H693;
DT   18-JUL-2018, integrated into UniProtKB/TrEMBL.
DT   18-JUL-2018, sequence version 1.
DT   24-JAN-2024, entry version 16.
DE   RecName: Full=LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411};
DE   Flags: Precursor;
GN   Name=lptD {ECO:0000256|HAMAP-Rule:MF_01411};
GN   ORFNames=C8K61_11780 {ECO:0000313|EMBL:PTQ67096.1};
OS   Pseudomonas sp. GV071.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC   Pseudomonadaceae; Pseudomonas.
OX   NCBI_TaxID=2135754 {ECO:0000313|EMBL:PTQ67096.1, ECO:0000313|Proteomes:UP000244119};
RN   [1] {ECO:0000313|EMBL:PTQ67096.1, ECO:0000313|Proteomes:UP000244119}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=GV071 {ECO:0000313|EMBL:PTQ67096.1,
RC   ECO:0000313|Proteomes:UP000244119};
RA   Pelletier D.;
RT   "Populus root and rhizosphere microbial communities from Tennessee, USA.";
RL   Submitted (APR-2018) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Together with LptE, is involved in the assembly of
CC       lipopolysaccharide (LPS) at the surface of the outer membrane.
CC       {ECO:0000256|HAMAP-Rule:MF_01411}.
CC   -!- SUBUNIT: Component of the lipopolysaccharide transport and assembly
CC       complex. Interacts with LptE and LptA. {ECO:0000256|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000256|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SIMILARITY: Belongs to the LptD family. {ECO:0000256|HAMAP-
CC       Rule:MF_01411}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC       feature annotation. {ECO:0000256|HAMAP-Rule:MF_01411}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PTQ67096.1}.
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DR   EMBL; QAOJ01000017; PTQ67096.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2T5H693; -.
DR   Proteomes; UP000244119; Unassembled WGS sequence.
DR   GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR   GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR   GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR   Gene3D; 2.60.450.10; Lipopolysaccharide (LPS) transport protein A like domain; 1.
DR   HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR   InterPro; IPR020889; LipoPS_assembly_LptD.
DR   InterPro; IPR007543; LptD_C.
DR   InterPro; IPR005653; OstA-like_N.
DR   PANTHER; PTHR30189; LPS-ASSEMBLY PROTEIN; 1.
DR   PANTHER; PTHR30189:SF1; LPS-ASSEMBLY PROTEIN LPTD; 1.
DR   Pfam; PF04453; LptD; 1.
DR   Pfam; PF03968; LptD_N; 1.
PE   3: Inferred from homology;
KW   Cell outer membrane {ECO:0000256|ARBA:ARBA00023237, ECO:0000256|HAMAP-
KW   Rule:MF_01411};
KW   Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|HAMAP-Rule:MF_01411};
KW   Reference proteome {ECO:0000313|Proteomes:UP000244119};
KW   Signal {ECO:0000256|HAMAP-Rule:MF_01411}.
FT   SIGNAL          1..33
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_01411"
FT   CHAIN           34..905
FT                   /note="LPS-assembly protein LptD"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_01411"
FT                   /id="PRO_5015791366"
FT   DOMAIN          162..293
FT                   /note="Organic solvent tolerance-like N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF03968"
FT   DOMAIN          406..813
FT                   /note="LptD C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF04453"
SQ   SEQUENCE   905 AA;  101621 MW;  72ED3E7766881193 CRC64;
     MAVKYPAFRK KFPLLVTGSL LALQPVATQY VVAAEQYDCQ VSPSGGWACA PKADNAVLPP
     RPVHSAGAVS SLAGTSAEKT STVASGEAVA DEAKPQLVTD SKGKALKSRS ADYSHLDWVP
     RDKLTAEQLA ETGPYCSGAY IEPERPGMND KTAKKDAPTY LSAKASRYEQ EQQVATLAGD
     VIMRQGSMQV QADEASLLQA ENRGELNGNV RLRDNGALVV GDHAKIQLDT GEAQIDNAEY
     VLHKASVRGS ALYAKRQEDS IIRLKDGTYT RCEPGSNAWN LKGNNITLNQ ATGFGTATNV
     TLRVKDIPIF YTPYIYFPID DRRQSGFLPP SIGSSSDTGL MLVTPYYFNL APNYDATLYP
     RIMSERGVMM EGEFRYLTQS SEGKVSAAYL DDGDDERKDE PKYEDQRYLY SLQNQTGLDS
     RLLGTIDYTK ISDPYYFQDL ETDLDVSNQT FVNQQGALTF RGDSFDAKLN VHQYQLATVT
     DVTPYDRLPQ VTFDGVLPFQ PGGLNFTYNT EFVRFDRNLD EYSYNGNLSP DSYLQGLTRA
     TGDRVHLEPG ASLPLNWNWG YVKPTVKYLY TDYSLDLDQQ GKNSLLPGQD FSSSQDRGVP
     LYSVDSGLYF DRNTTLFGNA YRQTLEPRLY YLNVPYRDQS DIPIFDTSET PFSYASLFRE
     NRFSSSDRIG DANQLSLGTS SSFIEPNGFE RAQVAIGQTL YFEDRKVQLP GIDAKDEASV
     SPYALTGQYR INRDWRVSSD FNWDPDAGET RSGNVMAHYQ PEANPGKIVN AGYRYRNDVK
     RFNPRTGEFE VAGDEYKIDQ SDFSVIWPVV PQWSAIARWQ FDYNQSRTLE AFGGFEYDNC
     CWKLRVINRY WVEYDEFDLQ REQKGDRGIF LQIVLKGLGG IVGNKVESFL DQGIQGYRER
     EDQAY
//