ID A0A2T5HES0_9PSED Unreviewed; 239 AA.
AC A0A2T5HES0;
DT 18-JUL-2018, integrated into UniProtKB/TrEMBL.
DT 18-JUL-2018, sequence version 1.
DT 24-JAN-2024, entry version 16.
DE SubName: Full=RNA polymerase sigma-28 (SigD/FliA/WhiG) subunit {ECO:0000313|EMBL:PTQ70075.1};
GN ORFNames=C8K61_107291 {ECO:0000313|EMBL:PTQ70075.1};
OS Pseudomonas sp. GV071.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=2135754 {ECO:0000313|EMBL:PTQ70075.1, ECO:0000313|Proteomes:UP000244119};
RN [1] {ECO:0000313|EMBL:PTQ70075.1, ECO:0000313|Proteomes:UP000244119}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=GV071 {ECO:0000313|EMBL:PTQ70075.1,
RC ECO:0000313|Proteomes:UP000244119};
RA Pelletier D.;
RT "Populus root and rhizosphere microbial communities from Tennessee, USA.";
RL Submitted (APR-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PTQ70075.1}.
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DR EMBL; QAOJ01000007; PTQ70075.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2T5HES0; -.
DR Proteomes; UP000244119; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.20.140.160; -; 1.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR012845; RNA_pol_sigma_FliA_WhiG.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR NCBIfam; TIGR02479; FliA_WhiG; 1.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30385:SF7; RNA POLYMERASE SIGMA FACTOR FLIA; 1.
DR PANTHER; PTHR30385; SIGMA FACTOR F FLAGELLAR; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000244119};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 25..96
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 181..227
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
SQ SEQUENCE 239 AA; 27245 MW; C61ED43563A10F17 CRC64;
MHAVDYAAQP TPRALFAPGA EQRWVRQYLP LVKRIVSQLS LQASQAMDRE DMEQIGLMGL
LECLRRYGEP DEQFGRFAAL RIRGAILDEL RRLDWRPRQL RQQVHKVRDA IRALARRLGR
VPSEEEVLAD TGLSAKAYQD YLCADASEAI ESLDELLQNG HDQATAGFED RLHKERLLEQ
ALGALNERER LILTLYYQHE LSLKEIALVL DLTDARVCQL SKQALAKACR FLTDKPQGA
//
