ID A0A2T5MKR8_9GAMM Unreviewed; 529 AA.
AC A0A2T5MKR8;
DT 18-JUL-2018, integrated into UniProtKB/TrEMBL.
DT 18-JUL-2018, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE SubName: Full=Nitrite reductase (NAD(P)H) small subunit {ECO:0000313|EMBL:PTU33171.1};
GN Name=nirD {ECO:0000313|EMBL:PTU33171.1};
GN ORFNames=CJD38_03465 {ECO:0000313|EMBL:PTU33171.1};
OS Stenotrophobium rhamnosiphilum.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Nevskiales; Nevskiaceae;
OC Stenotrophobium.
OX NCBI_TaxID=2029166 {ECO:0000313|EMBL:PTU33171.1, ECO:0000313|Proteomes:UP000244248};
RN [1] {ECO:0000313|EMBL:PTU33171.1, ECO:0000313|Proteomes:UP000244248}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=GT1R17 {ECO:0000313|EMBL:PTU33171.1,
RC ECO:0000313|Proteomes:UP000244248};
RA Liu Q., Xin Y.-H.;
RT "Novel species isolated from glacier.";
RL Submitted (APR-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=FAD; Xref=ChEBI:CHEBI:57692;
CC Evidence={ECO:0000256|ARBA:ARBA00001974};
CC -!- SIMILARITY: Belongs to the FAD-dependent oxidoreductase family.
CC {ECO:0000256|ARBA:ARBA00006442}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PTU33171.1}.
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DR EMBL; QANS01000001; PTU33171.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2T5MKR8; -.
DR OrthoDB; 9768666at2; -.
DR Proteomes; UP000244248; Unassembled WGS sequence.
DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:InterPro.
DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0008942; F:nitrite reductase [NAD(P)H] activity; IEA:InterPro.
DR GO; GO:0042128; P:nitrate assimilation; IEA:UniProtKB-KW.
DR CDD; cd03529; Rieske_NirD; 1.
DR Gene3D; 3.30.390.30; -; 1.
DR Gene3D; 3.50.50.60; FAD/NAD(P)-binding domain; 2.
DR Gene3D; 2.102.10.10; Rieske [2Fe-2S] iron-sulphur domain; 1.
DR InterPro; IPR036188; FAD/NAD-bd_sf.
DR InterPro; IPR023753; FAD/NAD-binding_dom.
DR InterPro; IPR016156; FAD/NAD-linked_Rdtase_dimer_sf.
DR InterPro; IPR012748; Rieske-like_NirD.
DR InterPro; IPR017941; Rieske_2Fe-2S.
DR InterPro; IPR036922; Rieske_2Fe-2S_sf.
DR InterPro; IPR041575; Rubredoxin_C.
DR NCBIfam; TIGR02378; nirD_assim_sml; 1.
DR PANTHER; PTHR43429:SF3; NADH OXIDASE-RELATED; 1.
DR PANTHER; PTHR43429; PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING; 1.
DR Pfam; PF07992; Pyr_redox_2; 1.
DR Pfam; PF13806; Rieske_2; 1.
DR Pfam; PF18267; Rubredoxin_C; 1.
DR PRINTS; PR00368; FADPNR.
DR PRINTS; PR00411; PNDRDTASEI.
DR SUPFAM; SSF51905; FAD/NAD(P)-binding domain; 2.
DR SUPFAM; SSF50022; ISP domain; 1.
DR PROSITE; PS51300; NIRD; 1.
DR PROSITE; PS51296; RIESKE; 1.
PE 3: Inferred from homology;
KW Iron {ECO:0000256|ARBA:ARBA00023004};
KW Iron-sulfur {ECO:0000256|ARBA:ARBA00023014};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nitrate assimilation {ECO:0000256|ARBA:ARBA00023063};
KW Reference proteome {ECO:0000313|Proteomes:UP000244248}.
FT DOMAIN 13..114
FT /note="Rieske"
FT /evidence="ECO:0000259|PROSITE:PS51296"
SQ SEQUENCE 529 AA; 58116 MW; 0D0E9A2D4B83D797 CRC64;
MNQNLPNPLD QVVDICALED ILPDTGVCAW LDERQVAVFR VGDGEDLYAI GNYDANSGAN
VLARGLVGDL GGRVVVASPI YKQHYDLKTG ECIEDPIASV RAYKAHVVDG RVRVTVPTSK
INSSGRKEHL VVIGNGMAAM RVVEELLRIA PELYDITVFG AEPHGNYNRI LLSPVLSGEK
QIEEIMLNTR EWYGRHGIAL HTSDPVVQIN RRERTVRAKS GYETKYDRIL LATGSNPFII
PVLGNDLKGV VSFRDLHDVD EMIDASKEGK YAVVIGGGLL GLEAANGLMR QGMKVTVVHL
MDSLMERQLD KHAGAMLKAS LEARGLTFMM EAQTEEILGY DHVIGVRFKD NDTVIPADLV
VMAVGIKPNI ELAQSCGLRC GRGVIVDDTL QTYDPRIYAV GECVEHRKAT YGLVAPLWEQ
ANVCATHLAQ MGFAHYKGSI TSTKLKVTGI DLFSAGDFMG GEGTEDLVMR DPKRGVYKRL
VIKDNRIKGA VLFGDVADGP WYFELMQKNT DITSIRQKLL FGQAFCEPA
//
