ID A0A2T5PDD6_9PSED Unreviewed; 552 AA.
AC A0A2T5PDD6;
DT 18-JUL-2018, integrated into UniProtKB/TrEMBL.
DT 18-JUL-2018, sequence version 1.
DT 24-JAN-2024, entry version 21.
DE RecName: Full=DNA ligase (ATP) {ECO:0000256|ARBA:ARBA00012727};
DE EC=6.5.1.1 {ECO:0000256|ARBA:ARBA00012727};
GN ORFNames=DBO85_03535 {ECO:0000313|EMBL:PTU75756.1};
OS Pseudomonas mangrovi.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=2161748 {ECO:0000313|EMBL:PTU75756.1, ECO:0000313|Proteomes:UP000244064};
RN [1] {ECO:0000313|EMBL:PTU75756.1, ECO:0000313|Proteomes:UP000244064}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TC-11 {ECO:0000313|EMBL:PTU75756.1,
RC ECO:0000313|Proteomes:UP000244064};
RA Chen C.;
RT "Pseudomonas sp. nov., isolated from mangrove soil.";
RL Submitted (APR-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PTU75756.1}.
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DR EMBL; QASN01000006; PTU75756.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2T5PDD6; -.
DR OrthoDB; 9767858at2; -.
DR Proteomes; UP000244064; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR CDD; cd07897; Adenylation_DNA_ligase_Bac1; 1.
DR CDD; cd07972; OBF_DNA_ligase_Arch_LigB; 1.
DR Gene3D; 1.10.3260.10; DNA ligase, ATP-dependent, N-terminal domain; 1.
DR Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR026333; ATP_dep_DNA_lig_pp_1105_fam.
DR InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR InterPro; IPR012308; DNA_ligase_ATP-dep_N.
DR InterPro; IPR036599; DNA_ligase_N_sf.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR NCBIfam; TIGR04120; DNA_lig_bact; 1.
DR PANTHER; PTHR45674; DNA LIGASE 1/3 FAMILY MEMBER; 1.
DR PANTHER; PTHR45674:SF13; DNA LIGASE-RELATED; 1.
DR Pfam; PF04679; DNA_ligase_A_C; 1.
DR Pfam; PF01068; DNA_ligase_A_M; 1.
DR Pfam; PF04675; DNA_ligase_A_N; 1.
DR SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR PROSITE; PS00697; DNA_LIGASE_A1; 1.
DR PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA replication {ECO:0000256|ARBA:ARBA00022705};
KW Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:PTU75756.1};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000244064}.
FT DOMAIN 323..455
FT /note="ATP-dependent DNA ligase family profile"
FT /evidence="ECO:0000259|PROSITE:PS50160"
SQ SEQUENCE 552 AA; 62243 MW; 6040F43D06E18CD1 CRC64;
MKAFAELYAQ LDATTSSNAK LQAMQDYFAQ AAPADAAWAV YFLAGGRPRQ VVPTKILREL
ATRLSGLSDW LFEESYQAVG DLAETIALLI PESPHACAEG LAWWLEEQLL PLRGLPPEEL
AARLPPLWAQ LDQQSLMVSL KLLTGAFRVG VSKLLVTRAL ANLAQVDAKR VAQRMVGYTD
LSHRPSAPRY LSLIAPESDE EHAQRGGQPY PFFLAHPLQQ PLEQFDAQLG PASDWLVEWK
WDGIRAQLVK RDGRHWLWSR GEELITERFP ELQALADALP DGCVLDGELV VWKQPEPGSD
ALFGIQPFAL LQQRIGRKTL SRKLLEEVPA ALLAYDLLEW RGEDWRKRPQ DERRARLEML
VAEIGDAHLH LSPQITGSNW QDLARQREAS RDLGVEGMML KRRDSLYGVG RTRDLGLWWK
WKIDPFSVDA VLIYAQRGHG RRASLYTDYT FAVWDDSAPG ERVLVPFAKA YSGLTDEEMR
KVDAIIRKTT VEKFGPVRSV TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKSVE
DADTLATLQG LL
//
