ID A0A2T6C2T7_9FLAO Unreviewed; 523 AA.
AC A0A2T6C2T7;
DT 18-JUL-2018, integrated into UniProtKB/TrEMBL.
DT 18-JUL-2018, sequence version 1.
DT 24-JAN-2024, entry version 13.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN ORFNames=C8N46_10238 {ECO:0000313|EMBL:PTX62642.1};
OS Kordia periserrulae.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Kordia.
OX NCBI_TaxID=701523 {ECO:0000313|EMBL:PTX62642.1, ECO:0000313|Proteomes:UP000244090};
RN [1] {ECO:0000313|EMBL:PTX62642.1, ECO:0000313|Proteomes:UP000244090}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 25731 {ECO:0000313|EMBL:PTX62642.1,
RC ECO:0000313|Proteomes:UP000244090};
RA Goeker M.;
RT "Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II
RT (KMG-II): from individual species to whole genera.";
RL Submitted (APR-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP-Rule:MF_00335};
CC Single-pass membrane protein {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PTX62642.1}.
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DR EMBL; QBKT01000002; PTX62642.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2T6C2T7; -.
DR OrthoDB; 9803205at2; -.
DR Proteomes; UP000244090; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 3: Inferred from homology;
KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_00335};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Membrane {ECO:0000256|HAMAP-Rule:MF_00335};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}; Transmembrane {ECO:0000256|HAMAP-Rule:MF_00335};
KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_00335}.
FT TRANSMEM 6..24
FT /note="Helical"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00335"
FT DOMAIN 339..432
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT COILED 29..60
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 523 AA; 58409 MW; 36D8E9628ABE877B CRC64;
MDSTTIIIAV AVGAIGLIIG FVIAKSLEKK QASKMIEEAK KEASAVLKEA KSDAENIKKD
KILQAKEKFL ELKAEHEKFI LAKDKKMAEA EKRTRDKESQ ISSELSKNKK LNQELETKLK
DYDYRLDFID KKKSEIDRLH KSQVEQLEVI SGLSADEAKE QLVESLKEEA KSDAMSYIQG
KLEEAKLTAQ QEAKKVIINT IQRIGTEEAV ENCVSVFNIE SDDVKGRIIG REGRNIRALE
AATGVEIIVD DTPEAIILSC FDSVRREIAR LSLHRLVTDG RIHPARIEEV VKKTRKQIDE
EIIEVGKRTV IDLGIHGLHP ELIKTVGRMK YRSSYGQNLL QHSREVAKLC GVMAAELGLN
PKLAKRAGLL HDIGKVPDTE TEVPHAILGM QWAEKYGEKE EVCNAIGAHH DEIEMTSMLS
PIVQVCDAIS GARPGARRQV LDSYIQRLKD LEDIAFGFTG VKKAYAIQAG RELRVIVESE
KVDDAKAAEL SFNISQKIQT DMTYPGQVKI TVIRETRAVN IAK
//
