ID A0A2U0SE60_9SPHN Unreviewed; 460 AA.
AC A0A2U0SE60;
DT 18-JUL-2018, integrated into UniProtKB/TrEMBL.
DT 18-JUL-2018, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE SubName: Full=XRE family transcriptional regulator {ECO:0000313|EMBL:PVX29668.1};
GN ORFNames=DD559_10335 {ECO:0000313|EMBL:PVX29668.1};
OS Sphingomonas pokkalii.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingomonas.
OX NCBI_TaxID=2175090 {ECO:0000313|EMBL:PVX29668.1, ECO:0000313|Proteomes:UP000245890};
RN [1] {ECO:0000313|EMBL:PVX29668.1, ECO:0000313|Proteomes:UP000245890}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=L3B27 {ECO:0000313|EMBL:PVX29668.1,
RC ECO:0000313|Proteomes:UP000245890};
RA Menon R., Kumari S., Rameshkumar N.;
RT "Description of Sphingomonas pokkalii sp nov, isolated from the rhizosphere
RT of saline tolerant pokkali rice and its draft genome analysis.";
RL Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the short-chain fatty acyl-CoA assimilation
CC regulator (ScfR) family. {ECO:0000256|ARBA:ARBA00007227}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PVX29668.1}.
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DR EMBL; QENQ01000001; PVX29668.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2U0SE60; -.
DR OrthoDB; 1123084at2; -.
DR Proteomes; UP000245890; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR026281; HTH_RamB.
DR InterPro; IPR010359; IrrE_HExxH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR018653; ScfR_C.
DR PANTHER; PTHR46797; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR46797:SF23; HTH-TYPE TRANSCRIPTIONAL REGULATOR PRPR; 1.
DR Pfam; PF01381; HTH_3; 1.
DR Pfam; PF06114; Peptidase_M78; 1.
DR Pfam; PF09856; ScfRs; 1.
DR PIRSF; PIRSF019251; Rv0465c; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 12..66
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 460 AA; 49344 MW; 35E0478F3A7E2AD1 CRC64;
MAERKLFAGH AIRRLRFQLG VTQAAMAEAL EISPSYLNLV ERNQRPISAA LMLKLAETYD
FDPRRLAAAE PGGGAEALRR RLADPLFADL AIDRHQLEEW LAGAPDGAEA FARAYDRMGG
GGPMPAPGAA QDPGPQVRRA IERWRNHFAD LDAAGEALAD ELRMAGEPYG AMAERLRVKH
QLAVRILPAE VMVDTLKRLD LHARQLQLSE ALDPSARAFA LAEQLAVEAR DEIEALVRGA
GLDRAAERPF RRHLTAYFAA AVTMPYARFL RACEASGYDL ELLQRRFGAS AAQVAHRLTT
LQRVGARGLS FFLMRFDRAG QVSKRYAGAS GSALVEAAVP CPLWNAYDAF ARTDETAVQL
VELEDGARAF TIARCVHPHG GAPGGVRPRF VIALGLPAAE AGTLAAARGV DLAGRAAPIG
LGCRACTRVA CPQRSAAPAG RAAAGSERER GVTAFGFAGD
//
