ID A0A2U9CHH4_SCOMX Unreviewed; 665 AA.
AC A0A2U9CHH4;
DT 12-SEP-2018, integrated into UniProtKB/TrEMBL.
DT 12-SEP-2018, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE SubName: Full=Si:ch211-243o19.6 wu:fc10f01 isoform 3 {ECO:0000313|EMBL:AWP16041.1};
GN ORFNames=SMAX5B_009046 {ECO:0000313|EMBL:AWP16041.1};
OS Scophthalmus maximus (Turbot) (Psetta maxima).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae;
OC Scophthalmus.
OX NCBI_TaxID=52904 {ECO:0000313|EMBL:AWP16041.1, ECO:0000313|Proteomes:UP000246464};
RN [1] {ECO:0000313|EMBL:AWP16041.1, ECO:0000313|Proteomes:UP000246464}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Martinez P.;
RT "Integrating genomic resources of turbot (Scophthalmus maximus) in depth
RT evaluation of genetic and physical mapping variation across individuals.";
RL Submitted (DEC-2017) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP026259; AWP16041.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2U9CHH4; -.
DR STRING; 52904.ENSSMAP00000013252; -.
DR OMA; MAVSCFT; -.
DR Proteomes; UP000246464; Chromosome 17.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd00590; RRM_SF; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR47678:SF5; SI:DKEY-33C12.4 ISOFORM X1; 1.
DR PANTHER; PTHR47678; TETRATRICOPEPTIDE REPEAT PROTEIN 31; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF13181; TPR_8; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00028; TPR; 3.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50005; TPR; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723};
KW Reference proteome {ECO:0000313|Proteomes:UP000246464};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW TPR repeat {ECO:0000256|PROSITE-ProRule:PRU00339};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}.
FT REPEAT 302..335
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT DOMAIN 529..601
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 621..647
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 621..647
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 113..292
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 139..163
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 164..178
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 208..224
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 241..292
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 665 AA; 75756 MW; 8AF63B3ABEA256E8 CRC64;
MPRKKAHVRG VAPQPVIQED TRLMRTHDSM VDFIKATTGP IHGFHAAGAF LNVLTSGLFA
FRNYDLEDDL IYSDDDDDDD DYHICPYNSA HRPIEPHPQI RQLTEEEANK HAEELIAEEE
RRKEKTEKNK RKKMRQKEKK RLEKENAVKE ILPEEERCKS DSSENLNENP VIESNTEGNE
SPECDKTQNE TEAVGHGESS GGLDKTKTLL TMDKKDEEEK ESDFNNSLYA CSAKPVPEET
CDPQSAKERK KGKRKSPEVQ QLEEEKPKVM ETPDVQKKED EKEEPDKEKP MGATVEEFAK
MSRELAATGN LWASSGQYEM AMKCFTDAIK FNPKEFRLFG NRSLCYERMH QYENALRDAD
LALSMEPSWI KGLFRKGKAL CGLKRYYEAS LIYKEVLKLE DSSAEAKQEI KRAQTLHLME
MGFSWTQSSE ALKKHATLEE AVEALFCGDV NEDPGAAGAS ADTTADYQVV QEVEEEEYDD
NEEEGEWIVL QPSRPRTQQI KEFDAPVQSR SNSQSPTPHL RNSVKPPFFS VWVGSLAPAV
TYSTLHELFS RVGAIYSIKM LLEHQCAFVN YTRKEDCDRA IQCFDGMVLE GAPLSVRGPS
KYQAAHGFAR SAATDPFSRS GQQKKECFFW RTSGCTRQDC TFRHVPEHKN IDKDKFTSRL
GNFNT
//
