ID A0A2V0PIU7_9CHLO Unreviewed; 1122 AA.
AC A0A2V0PIU7;
DT 12-SEP-2018, integrated into UniProtKB/TrEMBL.
DT 12-SEP-2018, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
DE Flags: Fragment;
GN ORFNames=Rsub_12315 {ECO:0000313|EMBL:GBF99636.1};
OS Raphidocelis subcapitata.
OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae;
OC CS clade; Sphaeropleales; Selenastraceae; Raphidocelis.
OX NCBI_TaxID=307507 {ECO:0000313|EMBL:GBF99636.1, ECO:0000313|Proteomes:UP000247498};
RN [1] {ECO:0000313|EMBL:GBF99636.1, ECO:0000313|Proteomes:UP000247498}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NIES-35 {ECO:0000313|EMBL:GBF99636.1,
RC ECO:0000313|Proteomes:UP000247498};
RX PubMed=29795299; DOI=10.1038/s41598-018-26331-6;
RA Suzuki S., Yamaguchi H., Nakajima N., Kawachi M.;
RT "Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an
RT insight into genome evolution and environmental adaptations in the
RT Sphaeropleales.";
RL Sci. Rep. 8:8058-8058(2018).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550};
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GBF99636.1}.
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DR EMBL; BDRX01000165; GBF99636.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2V0PIU7; -.
DR STRING; 307507.A0A2V0PIU7; -.
DR InParanoid; A0A2V0PIU7; -.
DR Proteomes; UP000247498; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006366; P:transcription by RNA polymerase II; IEA:InterPro.
DR CDD; cd02584; RNAP_II_Rpb1_C; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 3.30.1360.140; -; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR000684; RNA_pol_II_repeat_euk.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR007075; RNA_pol_Rpb1_6.
DR InterPro; IPR007073; RNA_pol_Rpb1_7.
DR InterPro; IPR038593; RNA_pol_Rpb1_7_sf.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF37; DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR Pfam; PF04992; RNA_pol_Rpb1_6; 1.
DR Pfam; PF04990; RNA_pol_Rpb1_7; 1.
DR Pfam; PF05001; RNA_pol_Rpb1_R; 9.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
DR PROSITE; PS00115; RNA_POL_II_REPEAT; 3.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000313|EMBL:GBF99636.1};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Phosphoprotein {ECO:0000256|ARBA:ARBA00022553};
KW Plastid {ECO:0000256|ARBA:ARBA00022640};
KW Reference proteome {ECO:0000313|Proteomes:UP000247498};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 1..38
FT /note="RNA polymerase alpha subunit"
FT /evidence="ECO:0000259|Pfam:PF00623"
FT DOMAIN 41..205
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04983"
FT DOMAIN 232..308
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF05000"
FT DOMAIN 309..485
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04992"
FT DOMAIN 486..845
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04998"
FT DOMAIN 571..723
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04990"
FT REGION 914..954
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 976..1122
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 983..1086
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:GBF99636.1"
SQ SEQUENCE 1122 AA; 121781 MW; 38B6C6A398F562D2 CRC64;
LNLSVTTPYN ADFDGDEMNM HVAQSHETRA EMREIMMVPR NIVSPQANKP VIGIVQDTLL
GSRLMTKRDT FIPADVMMNV LMCMEDWDGA VPMPAILKPQ PLWTGKQVFS MFLPRGVNLR
TKSSWAADGD PRDFSRDDSQ VLIVDGELIT GSVCKKTLGT SGGGLVHTTW IELGPDAARR
LINNTQFTVN HWLLQNGMSI GIGDTVADDA TMAKVNSILE EAKGRVQDVI ERFQTGQLEG
QPGRTMMEAF EANVNGILNK ARDDAGKAAQ SSVNWNNNIV RMVNAGSKGS FINISQMMAC
VGQQNVEHFK HIQAKEPEIR RLFGYGELAD GRPVDWLSPD QAEQLRSDLA ARALIDEEMA
KLRDDLRVMR TEVLRTGDSK LNIPVQMDRL VWIAQTKFDC GPSKPPRPGG LSPLDVVKRV
QELSEKLVVV VGRDGLSTEA QRNATVTFMA LLRASLASKR VLKEYRLNSE AFSWMVGEVE
RRFNLSLANC GEAIGTVAAQ SIGEPTTQMT LNTFHFAGVS AKNVTLGVPR LTEIINLAKN
IKTPSLTVYL TKEYSSDRDL AKEIQCKLEY TTLRSVMART EVWYDPVDMS DPLSTVVPGD
AAVLEYAYGL GEPEELVRAA PWLLRMEMDS AMMVDKKLEM DGVEARIRDE FQDVLTVAVS
DNNARPLVAR LRLLEDGAIN AVGGGEDDDD MPSFGEGALA AQQTTDETMR KLDTTYLRDL
KLQGVEGIRK VFLRQTTHTT PEADGSGYKK ESEWVLDTEG VNLLQVLAHP GVDATRTMSN
DLVEIINDLG IEAVRQALMR ELRNVIEFDG SYVNYRHLAI LCDVMTSRGH LMAITRHGIN
RSEAGPLAQC SFEETVDIIT RAAVFAERDN MEGVSENIMF GQLCPLGTGA FDLLLNEDEL
EEATDLLALE RYDAEGPDGA TMTPHRTPGR APGTPGRTPH RTPLRDGEPG YASPVYSPLR
EIAFSPSRVA AFSPDRAAGY SPTSPGYSPT SPGYSPTSPG YSPTSPGYSP TSPGYSPTSP
GYSPTSPGYS PTSPGYSPTS PGYSPTSPNY SPTSPTYSPT SPTYSPTSPN YSPTSPAYSP
TSPTYSPTSP AYSPPQDGAG GAGGAAGGSG GGGGNLSPTA DP
//
