ID A0A2V3IG57_9FLOR Unreviewed; 828 AA.
AC A0A2V3IG57;
DT 12-SEP-2018, integrated into UniProtKB/TrEMBL.
DT 12-SEP-2018, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE SubName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 {ECO:0000313|EMBL:PXF41069.1};
GN ORFNames=BWQ96_09209 {ECO:0000313|EMBL:PXF41069.1};
OS Gracilariopsis chorda.
OC Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gracilariales;
OC Gracilariaceae; Gracilariopsis.
OX NCBI_TaxID=448386 {ECO:0000313|EMBL:PXF41069.1, ECO:0000313|Proteomes:UP000247409};
RN [1] {ECO:0000313|EMBL:PXF41069.1, ECO:0000313|Proteomes:UP000247409}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SKKU-2015 {ECO:0000313|EMBL:PXF41069.1,
RC ECO:0000313|Proteomes:UP000247409};
RC TISSUE=Whole body {ECO:0000313|EMBL:PXF41069.1};
RX PubMed=29688518; DOI=10.1093/molbev/msy081;
RA Lee J., Yang E.C., Graf L., Yang J.H., Qiu H., Zel Zion U., Chan C.X.,
RA Stephens T.G., Weber A.P.M., Boo G.H., Boo S.M., Kim K.M., Shin Y.,
RA Jung M., Lee S.J., Yim H.S., Lee J.H., Bhattacharya D., Yoon H.S.;
RT "Analysis of the draft genome of the red seaweed Gracilariopsis chorda
RT provides insights into genome size evolution in Rhodophyta.";
RL Mol. Biol. Evol. 0:0-0(2018).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PXF41069.1}.
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DR EMBL; NBIV01000237; PXF41069.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2V3IG57; -.
DR STRING; 448386.A0A2V3IG57; -.
DR Proteomes; UP000247409; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF83; PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX16; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000313|EMBL:PXF41069.1};
KW Hydrolase {ECO:0000313|EMBL:PXF41069.1};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000247409}.
FT DOMAIN 194..355
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 360..553
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 11..28
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 828 AA; 93891 MW; 424EE9F4FF995E68 CRC64;
MSSPAKRPRS PSKPSVDELR KQSRRNYLAR RETQQLSQLR DEIIDEKTLF RDEELTERER
RDLQLKQQIY ELATERAASS NVAPTYVVPD QKGVQDDSID VTSLDAHPAS DQKIWEDSQI
RKGKLHTQQT AHSSKYPILF DALDFDLPAK LQGLPHLPQR SFAQQRIAKR KEERERIQEE
RRSLPMYAHR DALIKAIKQY QVVIVQSETG SGKTTQIPQY LIEEGFGSVV CTQPRRVAAM
SVAARVAYEM GVKLGNEVGY SIRFEDCTSD QTVIKYVTDG MLLREFLSEP DLKAYDVILI
DEAHERSMST DIVMGLIKDI SRFRGDDVRV IISSATMDTE KFSSYFDDAP IYSVPGRRYD
VDIYYTKTPE PDYVEASCVS VLQIHASQPA GDILVFLTGQ EEIEAAEEIL RERTRGLGSK
LGELIIAPIY ATLPSEMQAK IFEPTPEGAR KVVLATNIAE TSVTIPGIVY VIDPGFCKQK
SYNAKTGMES LLVVPVSRAG AKQRAGRAGR TQPGKCFRLY TKWSYMNEME EDTVPELLRT
NLSQVVLLLL SLGIDNLIDF DFIDAPPPEA LLRSLEHLYA LGALNDKGKL TKLGRRMAEL
PLEPMMAKAL LASEKYKCSE EVTVICSMLS VNNAVFYRPK QKKMMADAAR AAFARGGGGD
HMTLLRCYAQ WRDAGFSTQW CYEHFVQTRT MKRARDVYEQ LDALLERVEI DRHSVGTGDK
VPILKALTAG FFYNACRLQK NGHYRTLKNP HTVRIHPSSC FANAEIRPRW LIYHELVFTT
KEFMRQVFEI EGNWLHEAAP HFHKAEDVLE ESKRKMPKVL GKAGGKVR
//