ID A0A2V3IJV1_9FLOR Unreviewed; 771 AA.
AC A0A2V3IJV1;
DT 12-SEP-2018, integrated into UniProtKB/TrEMBL.
DT 12-SEP-2018, sequence version 1.
DT 27-MAR-2024, entry version 11.
DE SubName: Full=DNA polymerase I A, chloroplastic/mitochondrial {ECO:0000313|EMBL:PXF42329.1};
GN ORFNames=BWQ96_07964 {ECO:0000313|EMBL:PXF42329.1};
OS Gracilariopsis chorda.
OC Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gracilariales;
OC Gracilariaceae; Gracilariopsis.
OX NCBI_TaxID=448386 {ECO:0000313|EMBL:PXF42329.1, ECO:0000313|Proteomes:UP000247409};
RN [1] {ECO:0000313|EMBL:PXF42329.1, ECO:0000313|Proteomes:UP000247409}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SKKU-2015 {ECO:0000313|EMBL:PXF42329.1,
RC ECO:0000313|Proteomes:UP000247409};
RC TISSUE=Whole body {ECO:0000313|EMBL:PXF42329.1};
RX PubMed=29688518; DOI=10.1093/molbev/msy081;
RA Lee J., Yang E.C., Graf L., Yang J.H., Qiu H., Zel Zion U., Chan C.X.,
RA Stephens T.G., Weber A.P.M., Boo G.H., Boo S.M., Kim K.M., Shin Y.,
RA Jung M., Lee S.J., Yim H.S., Lee J.H., Bhattacharya D., Yoon H.S.;
RT "Analysis of the draft genome of the red seaweed Gracilariopsis chorda
RT provides insights into genome size evolution in Rhodophyta.";
RL Mol. Biol. Evol. 0:0-0(2018).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PXF42329.1}.
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DR EMBL; NBIV01000168; PXF42329.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2V3IJV1; -.
DR STRING; 448386.A0A2V3IJV1; -.
DR Proteomes; UP000247409; Unassembled WGS sequence.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:InterPro.
DR GO; GO:0006261; P:DNA-templated DNA replication; IEA:InterPro.
DR CDD; cd06139; DNA_polA_I_Ecoli_like_exo; 1.
DR Gene3D; 3.30.70.370; -; 1.
DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR001098; DNA-dir_DNA_pol_A_palm_dom.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR002298; DNA_polymerase_A.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR10133; DNA POLYMERASE I; 1.
DR PANTHER; PTHR10133:SF27; DNA-DIRECTED DNA POLYMERASE; 1.
DR Pfam; PF00476; DNA_pol_A; 2.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR PRINTS; PR00868; DNAPOLI.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00482; POLAc; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000247409}.
FT DOMAIN 40..238
FT /note="3'-5' exonuclease"
FT /evidence="ECO:0000259|SMART:SM00474"
FT DOMAIN 504..733
FT /note="DNA-directed DNA polymerase family A palm"
FT /evidence="ECO:0000259|SMART:SM00482"
SQ SEQUENCE 771 AA; 87486 MW; D38BED970501782B CRC64;
MPLLAPRLHR AVRRAACRRL FAHAAGALSP APHPDNVTVV QDVRAATSVV AALFELPPDT
VVAWDTETHA VDPSRQSPVG NGRVICATAY AGHHVDFGTG ARLFVDCLQP GVLQVLRPYF
ESRATQKVWH NYSFDRHVLA NHGIALRGFA GDTMHMARLA DSSLRKYSLQ ELCKQFLHDG
LRKTPMHERF SALLGKKAAL HTLAIHNNPA LRHEWIQYAS MDAELTHRLC HRLRTELQTM
RIHGCNSTTQ ITARYQTLYD LYVALLVPFG ELLTDMERLG FKVDTEWLKT AAVHARADQL
RLEDHFRAWA QTHSPDAKYM NLHSDLQKQH LFFAPCNNKL QPSLSLPRRK CFNLVLTGEL
KNRYLAELQS SQSEEHNKLY QMYTGPNPKK VKRDVVLEGL GKKPHEYTAK GWPSVSAKAM
NKLANKSAKK QNQSDREMSC AIDHLIGATA ISSLMSSFIV PLQQWPGGDG RIHASLNLNT
ETGRLSSRRP NLQNQPALEK DRYRIRKAFV PEAGKSLIVA DYGQLELRLL AHITECKSMI
EAFHAGGDFH SRTALTMFDD VKRAVEQKKC ILEREERSDP ASSLPLLKDM FPVERRKAKT
LNFSIAYGKT IVGLARDWNT SEEEAAETLN LWYKERQEVR QWQRQCKRFL RDHQFVETIT
GRRRHLPDIA SDRMHERYHA QRAAINAPLQ GSAADLVMGA MLKLHQDRVL RALGWNIILQ
VHDEIILEGP EESADIALPI VVEKMKNPLD IELRVDLTVD AKCAQSWYDA K
//
