ID A0A2V3INK8_9FLOR Unreviewed; 268 AA.
AC A0A2V3INK8;
DT 12-SEP-2018, integrated into UniProtKB/TrEMBL.
DT 12-SEP-2018, sequence version 1.
DT 27-MAR-2024, entry version 17.
DE SubName: Full=30S ribosomal protein S4 {ECO:0000313|EMBL:PXF43666.1};
GN ORFNames=BWQ96_06571 {ECO:0000313|EMBL:PXF43666.1};
OS Gracilariopsis chorda.
OC Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gracilariales;
OC Gracilariaceae; Gracilariopsis.
OX NCBI_TaxID=448386 {ECO:0000313|EMBL:PXF43666.1, ECO:0000313|Proteomes:UP000247409};
RN [1] {ECO:0000313|EMBL:PXF43666.1, ECO:0000313|Proteomes:UP000247409}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SKKU-2015 {ECO:0000313|EMBL:PXF43666.1,
RC ECO:0000313|Proteomes:UP000247409};
RC TISSUE=Whole body {ECO:0000313|EMBL:PXF43666.1};
RX PubMed=29688518; DOI=10.1093/molbev/msy081;
RA Lee J., Yang E.C., Graf L., Yang J.H., Qiu H., Zel Zion U., Chan C.X.,
RA Stephens T.G., Weber A.P.M., Boo G.H., Boo S.M., Kim K.M., Shin Y.,
RA Jung M., Lee S.J., Yim H.S., Lee J.H., Bhattacharya D., Yoon H.S.;
RT "Analysis of the draft genome of the red seaweed Gracilariopsis chorda
RT provides insights into genome size evolution in Rhodophyta.";
RL Mol. Biol. Evol. 0:0-0(2018).
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS4 family.
CC {ECO:0000256|ARBA:ARBA00007465}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PXF43666.1}.
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DR EMBL; NBIV01000115; PXF43666.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2V3INK8; -.
DR STRING; 448386.A0A2V3INK8; -.
DR Proteomes; UP000247409; Unassembled WGS sequence.
DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro.
DR GO; GO:0019843; F:rRNA binding; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR CDD; cd00165; S4; 1.
DR Gene3D; 3.10.290.10; RNA-binding S4 domain; 1.
DR InterPro; IPR022801; Ribosomal_uS4.
DR InterPro; IPR002942; S4_RNA-bd.
DR InterPro; IPR036986; S4_RNA-bd_sf.
DR PANTHER; PTHR11831; 30S 40S RIBOSOMAL PROTEIN; 1.
DR PANTHER; PTHR11831:SF4; 37S RIBOSOMAL PROTEIN NAM9, MITOCHONDRIAL; 1.
DR Pfam; PF01479; S4; 1.
DR SMART; SM00363; S4; 1.
DR SUPFAM; SSF55174; Alpha-L RNA-binding motif; 1.
DR PROSITE; PS50889; S4; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000247409};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980,
KW ECO:0000313|EMBL:PXF43666.1};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730}.
FT DOMAIN 130..190
FT /note="RNA-binding S4"
FT /evidence="ECO:0000259|SMART:SM00363"
SQ SEQUENCE 268 AA; 30479 MW; AC776FAA896F4C1C CRC64;
MPVNYQLKNL RRLFGEGTFL RPATGEGLPQ ATGKIARVTR RLVAAKDADS QPKRTKLLGG
VPRAFFGEQP PRSVRNKAVA AQLNTIHLFE KQKMRLYYGA MRDAKFKKYV QEATCTRYNT
DAHLIRLLEL RLDTFLYRTG FVKTPSQARQ WIYHEHVLVN NDVVSVKSYR MRPGDVMSIA
SHHVENAFLA ATDCAQMRQS FGCGASWIVS RNDPAGMLPW MEIDRVGLSA ILVRHPTDEE
ARSMTRAALF PYIRDANLNP HAAMRAYR
//
