ID A0A314KGT0_NICAT Unreviewed; 1447 AA.
AC A0A314KGT0;
DT 10-OCT-2018, integrated into UniProtKB/TrEMBL.
DT 10-OCT-2018, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
GN Name=NRPD1 {ECO:0000313|EMBL:OIT28545.1};
GN ORFNames=A4A49_18139 {ECO:0000313|EMBL:OIT28545.1};
OS Nicotiana attenuata (Coyote tobacco).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae;
OC Nicotiana.
OX NCBI_TaxID=49451 {ECO:0000313|EMBL:OIT28545.1, ECO:0000313|Proteomes:UP000187609};
RN [1] {ECO:0000313|EMBL:OIT28545.1, ECO:0000313|Proteomes:UP000187609}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. UT {ECO:0000313|Proteomes:UP000187609};
RC TISSUE=Leaves {ECO:0000313|EMBL:OIT28545.1};
RA Xu S., Brockmoeller T., Gaquerel E., Navarro A., Kuhl H., Gase K., Ling Z.,
RA Zhou W., Kreitzer C., Stanke M., Tang H., Lyons E., Pandey P., Pandey S.P.,
RA Timmermann B., Baldwin I.T.;
RT "The genome of Nicotiana attenuata.";
RL Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OIT28545.1}.
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DR EMBL; MJEQ01002030; OIT28545.1; -; Genomic_DNA.
DR RefSeq; XP_019231702.1; XM_019376157.1.
DR RefSeq; XP_019231703.1; XM_019376158.1.
DR STRING; 49451.A0A314KGT0; -.
DR EnsemblPlants; OIT28545; OIT28545; A4A49_18139.
DR GeneID; 109212510; -.
DR Gramene; OIT28545; OIT28545; A4A49_18139.
DR KEGG; nau:109212510; -.
DR OrthoDB; 451894at2759; -.
DR Proteomes; UP000187609; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd10506; RNAP_IV_RPD1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 3.10.450.40; -; 1.
DR Gene3D; 6.20.50.80; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR040403; NRPD1_N.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF36; DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1; 1.
DR Pfam; PF11523; DUF3223; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 4: Predicted;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000313|EMBL:OIT28545.1};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000187609};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 214..485
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
SQ SEQUENCE 1447 AA; 161067 MW; E4D69008D30F7C8F CRC64;
MEHDLIEQQV PSGTLRGIIF NILSETDAAK LAAKVIGAVN EVTDPALGFP NPIFECSTCG
AKDGKKCEGH FGLINFPFTI LNPYFISEVA KILNKVCPGC KSVRRDKVKG ADTTSACNYC
DGILRGYPPM KFKVSPKDMF GKTAIIAEVS EKKLQQTSGG SLASDYWKFI PDDAQQDASF
NSSKYKKVLT HAQVYSILKD VDPGFLEGLF RRKNSIFLKS CLLTPNSHRV TEFGQHMIFD
ESNRLYRKLI DFRGTANDLS MCVFNRIKVS KIRAERSLTN DPNAPATGLK YVKELVLAKR
TNHAFRMVVV GDPNIKLGEI GIPCHVAEDL HMAEPLSSRN WEKLTDHCDL MILQKGAIHV
RRNGVLVRIS VMDQLQRGDI IYRPLIDGDV VLINRPPSIH QHSLIALSVR ILPIISVLSI
NPLVCSPFRG DFDGDCLHGY VPQSIDSRVE LSELVGLNRQ LIDGQSGQNL LSLSHDSLTA
AHLILEEGVF LDRFQMQQLQ MFCPHQVGMP AIVRAPSRNR SYWTGKQLFS LFLPSDLDCD
FPSNGVCISD GEIVTSSGGS SWLRDASENL FYTLVKHHGG DTLDLLYAAQ AVLCEWLSMR
GLSVSLSDLY ISSDPYSREN MIDEVFCGLQ EAERLSYVQL LMTRYNHDFL AGRLEVSQKA
MGFDLEFMSI MQQMSASLSQ ASVTAFKQVF RDIQNLVYNY ASKENSFLAM LKAGSKGNLL
KLVQHSMCLG LQQSLVPLSF RMPRQLSCDA WNNHKAHLPF EKAHNVPERP GSYIPCAVVE
NSFLAGLNPL ECFVHSLTTR DSSFSGHADV SGTLNRKLMF FMRDLYIGYD GTVRNAYGNQ
IVQFSYYNAD QIASTYNHAS HAIGGHPVGS LAACAISEAA YSALDLPIGA LEPSPLLNLK
KILEAGVKSN SSEKTASLFL SRRLGRWAHG FEYGALEVKG HLERLLLSDI VSTVMICFSP
ETCKSTHSSP WVCHFHIDKE YVKTRRLKLK SVIDALNMRY RSTRMEAGID LPSLHITCKD
CSVAGMQKAN SKICIAVAVV ETSKDSFSLL DTLRDLVIPF LLETVIKGFS AFKKVDILWR
ESPSTSKSSR GSTGELYLQV FMSQSCDRNN FWNALVDSCL HIMDLIDWER SHPDNVHDLT
VAYGVDVAWK YFLRNLNSAV SETGKKILPE HLVLAADCLT ATGEFVPLNT KGLAQQRKCA
GVISPFMQAC FSHPGDSFVR AAKTELSDDL QGSLEALAWG KTPSTGTGFS FDIIYSGKGY
EPAAPTDVYA LLGNHVTSNK QKVKVTLDED NETADKALAR RLCKLDDLNT KRCKSQWSIA
NLRSFLSFND IKKLSQALKQ MLSKYAIDRE LSEADKSIVM MALHFHPRRS EKIGKGAMEI
KIGYHKEYED SRCFMLVRTD GTVEDFSYRK CLQHALELIA PQKAKTYKWL NGASCGPTAS
TLQNEVK
//
