ID A0A314UFM9_PRUYE Unreviewed; 829 AA.
AC A0A314UFM9;
DT 10-OCT-2018, integrated into UniProtKB/TrEMBL.
DT 10-OCT-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE SubName: Full=BTB/POZ domain-containing protein {ECO:0000313|EMBL:PQM36325.1};
GN ORFNames=Pyn_26714 {ECO:0000313|EMBL:PQM36325.1};
OS Prunus yedoensis var. nudiflora.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus.
OX NCBI_TaxID=2094558 {ECO:0000313|EMBL:PQM36325.1, ECO:0000313|Proteomes:UP000250321};
RN [1] {ECO:0000313|EMBL:PQM36325.1, ECO:0000313|Proteomes:UP000250321}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Jeju island {ECO:0000313|Proteomes:UP000250321};
RC TISSUE=Leaf {ECO:0000313|EMBL:PQM36325.1};
RA Baek S., Kim J.-H., Choi K., Kim G.-B., Cho A., Jang H., Shin C.-H.,
RA Yu H.-J., Mun J.-H.;
RT "Draft genome of wild Prunus yedoensis var. nudiflora.";
RL Submitted (FEB-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC {ECO:0000256|ARBA:ARBA00004906}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the NPH3 family. {ECO:0000256|PROSITE-
CC ProRule:PRU00982}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PQM36325.1}.
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DR EMBL; PJQY01003558; PQM36325.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A314UFM9; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000250321; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0030880; C:RNA polymerase complex; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR Gene3D; 1.20.1250.40; -; 1.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR043454; NPH3/RPT2-like.
DR InterPro; IPR027356; NPH3_dom.
DR InterPro; IPR006590; RNA_pol_Rpb4/RPC9_core.
DR InterPro; IPR005574; Rpb4/RPC9.
DR InterPro; IPR038324; Rpb4/RPC9_sf.
DR PANTHER; PTHR32370:SF106; NPH3 DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR32370; OS12G0117600 PROTEIN; 1.
DR Pfam; PF03000; NPH3; 1.
DR Pfam; PF03874; RNA_pol_Rpb4; 1.
DR SMART; SM00657; RPOL4c; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR PROSITE; PS51649; NPH3; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000250321}.
FT DOMAIN 201..478
FT /note="NPH3"
FT /evidence="ECO:0000259|PROSITE:PS51649"
FT REGION 546..565
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 588..701
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 588..604
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 632..663
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 682..701
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 829 AA; 92192 MW; 80172F33B60CE992 CRC64;
MRDGGSSRHL VGGKMIIRNH PKGHIVAAES TNPEMKFMKI GTKPDTFCTE EATRTVISDV
PSDLLIQINN ISYLLHKFPL VPKCGLLQRL CSDSGDSEKV SIELHDIPGV PSNDESLEKG
NFVPKLEAFF NSCILEGWKD SITTLETTVK LPEWSENLGI IRKCIDSIVE KILTPPAKVS
WSYTYTRPGY TKKQHHSVPK DWWTEDISDL DVDLFRCIIT AVASTYMLPP QLIGEALHVY
ACRWLPDTTR PPPQTDEQFM EKNRRIVDTI VSMIPGDKRA VCVGFLLRLL IVANYLGVSP
VTKTELLRRS SLQLQEATVN DLISPSHSPT DPEFYDIDLV VTVLQSFLVL WRRQSPAAAS
ASELNGSSAQ FLGTMRQVGK LIDSYLQVVA RDANMPVSKL VSLAEALPDI AREDHDDIYK
AINTYLKEHG DLSKADKKRL CRILDCQKLS PEVRAHAVKN ERLPLRTVVQ VLFFEQDRDR
ASNSKVAATH DHHHKHKLLP LMPSQSQSQE LFSTGKQTVP TSRELDIHHG HGHGKLKLGA
ADHHDKFTSS RGDHSTRRTN VAGKKDYPLH LQTKRSDGKF PVGTERKVVS STEIQEQVEH
QLETGSGSKL DAKKMIQRGI KSSLKSTPST KDASLKGKDD SSTKSKKGRK VQFDSEGLHE
PKSNFSSKFD NPAAASGKAD WGKGGKGDKV GNGRKKEPQP LELKIEQELP QSAKCLMDCE
AADILQGIQE QMILLSKDPT IKIPVSFDKG LQYAKRTSHY TNPQSVRKVL EALTKYGVSD
GEISVIANVC PETADEVFAL VPSLKTTRSV LIQPLKEVLS ELTKLKQST
//
