ID A0A314XM79_PRUYE Unreviewed; 440 AA.
AC A0A314XM79;
DT 10-OCT-2018, integrated into UniProtKB/TrEMBL.
DT 10-OCT-2018, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE SubName: Full=RNA polymerase sigma factor sigD chloroplastic {ECO:0000313|EMBL:PQP95634.1};
GN ORFNames=Pyn_26507 {ECO:0000313|EMBL:PQP95634.1};
OS Prunus yedoensis var. nudiflora.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus.
OX NCBI_TaxID=2094558 {ECO:0000313|EMBL:PQP95634.1, ECO:0000313|Proteomes:UP000250321};
RN [1] {ECO:0000313|EMBL:PQP95634.1, ECO:0000313|Proteomes:UP000250321}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Jeju island {ECO:0000313|Proteomes:UP000250321};
RC TISSUE=Leaf {ECO:0000313|EMBL:PQP95634.1};
RA Baek S., Kim J.-H., Choi K., Kim G.-B., Cho A., Jang H., Shin C.-H.,
RA Yu H.-J., Mun J.-H.;
RT "Draft genome of wild Prunus yedoensis var. nudiflora.";
RL Submitted (FEB-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PQP95634.1}.
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DR EMBL; PJQY01002213; PQP95634.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A314XM79; -.
DR STRING; 2094558.A0A314XM79; -.
DR Proteomes; UP000250321; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0071482; P:cellular response to light stimulus; IEA:UniProt.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF70; RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00715; SIGMA70_1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000250321};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 231..244
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00715"
SQ SEQUENCE 440 AA; 49548 MW; 0F00300F8C86F841 CRC64;
MAIITSICSS PNQPPILPTL SLPTIPFTPL KTHHPLQLHL PFPSSSSKFG GNLVSNDALA
IAAAAEALVL ARAAVEAAID AVAVTDEIGE VWSCRESGNE SGGLVARRKR RRKRRKGLEA
LDEEMKRDVE DGMVSFGFVR YEHLSPSEEA ECCLSLKEGA RLESERFRVV EAQEHEPTSK
QLAKAMGMKM RSIDKVLCKR RESQEKIIRS YRGLVVSVAS SYQGKGLSFQ DLIQEGSIGL
LRGAEKFDHE REWKLSTYVY WWIRQAIIRA IENKSRIIRL PGHVCGMMAK ITKAQNSLNQ
RFQRLPSHDE IAEVMKVNAS TVKLVCERSR PPISLDRVAT VRGSMTLQEI MQGPEEMMPE
KMLTRKLMKQ EVEKLLKKLS DREANVLRLH FGLNGESPQS FEEIGRLLKL SRERVRQING
IALSKLKHTS TLDNLKLYIV
//
