ID A0A315VGP4_GAMAF Unreviewed; 767 AA.
AC A0A315VGP4;
DT 10-OCT-2018, integrated into UniProtKB/TrEMBL.
DT 10-OCT-2018, sequence version 1.
DT 24-JAN-2024, entry version 15.
DE RecName: Full=Transcription initiation factor TFIID subunit 6 {ECO:0000256|ARBA:ARBA00040091};
GN ORFNames=CCH79_00001992 {ECO:0000313|EMBL:PWA22628.1};
OS Gambusia affinis (Western mosquitofish) (Heterandria affinis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae;
OC Gambusia.
OX NCBI_TaxID=33528 {ECO:0000313|EMBL:PWA22628.1, ECO:0000313|Proteomes:UP000250572};
RN [1] {ECO:0000313|EMBL:PWA22628.1, ECO:0000313|Proteomes:UP000250572}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NE01/NJP1002.9 {ECO:0000313|EMBL:PWA22628.1};
RC TISSUE=Muscle {ECO:0000313|EMBL:PWA22628.1};
RX PubMed=29703783;
RA Hoffberg S.L., Troendle N.J., Glenn T.C., Mahmud O., Louha S., Chalopin D.,
RA Bennetzen J.L., Mauricio R.;
RT "A High-Quality Reference Genome for the Invasive Mosquitofish Gambusia
RT affinis Using a Chicago Library.";
RL G3 (Bethesda) 8:1855-1861(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TAF6 family.
CC {ECO:0000256|ARBA:ARBA00007688}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PWA22628.1}.
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DR EMBL; NHOQ01001678; PWA22628.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A315VGP4; -.
DR STRING; 33528.ENSGAFP00000007038; -.
DR Proteomes; UP000250572; Unassembled WGS sequence.
DR GO; GO:0000124; C:SAGA complex; IEA:InterPro.
DR GO; GO:0046695; C:SLIK (SAGA-like) complex; IEA:InterPro.
DR GO; GO:0005669; C:transcription factor TFIID complex; IEA:InterPro.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0016251; F:RNA polymerase II general transcription initiation factor activity; IEA:InterPro.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR CDD; cd08050; TAF6C; 1.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR Gene3D; 1.25.40.770; TAF6, C-terminal HEAT repeat domain; 1.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR037796; TAF6.
DR InterPro; IPR011442; TAF6_C.
DR InterPro; IPR046344; TAF6_C_sf.
DR InterPro; IPR004823; TAF_TATA-bd_Histone-like_dom.
DR PANTHER; PTHR10221; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR PANTHER; PTHR10221:SF9; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR Pfam; PF02969; TAF; 1.
DR Pfam; PF07571; TAF6_C; 1.
DR SMART; SM00803; TAF; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
DR SUPFAM; SSF47113; Histone-fold; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000250572};
KW Signal {ECO:0000256|SAM:SignalP};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT SIGNAL 1..26
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 27..767
FT /note="Transcription initiation factor TFIID subunit 6"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5016332594"
FT DOMAIN 134..200
FT /note="TATA box binding protein associated factor (TAF)
FT histone-like fold"
FT /evidence="ECO:0000259|SMART:SM00803"
FT REGION 110..129
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 271..331
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 609..629
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 637..656
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 731..767
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 111..129
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 767 AA; 83886 MW; B1C3DF29C3B43133 CRC64;
MVVVKNMAMC FILCVFFIVL FQQAEAADEL RISSGLLLHR RRRGGCVGPG RFDELRAVQG
PGAGPRAGQG LKVRVNIDRL YLWWGRLSHV WVTRVFIMVT DVRQRTLVNK QHHGDSGTQQ
TGMAEERRQK QCSVSLPTES MKAMAESVGV GQLQEESCVA LSEEVSYRIK EIAQDALKFM
HHGKRRKLTT SDIDNALKLK NVEPLYGFQA QEFIPFRFAS GGGRELHFYE EKEVDLSDII
NTPLPRVPLD VSLKVYDRSF LTAHWLSIEG VQPSIPENPP PASKEQQKAE STEPLKVVKP
GQEEKGAIQG KGQNAPAPDN KGKEKGLIRL KPRSTHELSV EQQLYYKEIT EACVGSCEAK
RAEALQSIAT DPGLYQMLPR FSTFISEGVR VNVVQNNLAL LIYLMRMVKA LMDNPTLYLE
KYLHELIPAV VTCIVSKQLC LRPDVDNHWA LRDFAARLMA QSCKTFSTTT NNIQSRITKT
LTKSLLDDKT QWTTRYGSIA GLAELGADVI KTLILPRLTV EGARIKAVMD GPVVSNIDRI
GAEHVQSLLL KHCASVIAKI RPQPDNVEQY RTDFGYLGPM LCSHVMKART QAALQAQQVN
RTTLTITQPR STLSVSQSGL SGSGGPRTPS IIKVPSSLTL MSPRPGTPSQ PSPPATKYIV
MGTSAGAAST QQVITLSSSQ SASPVTSTVP SATSTLQPLV KLEPGSGSGL TASRPMQKYI
VVSLPSSASS LETKSSVLPS SISSTQVDGG IKLERSDSPA ASTQSPH
//