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Database: UniProt
Entry: A0A315VGP4_GAMAF
LinkDB: A0A315VGP4_GAMAF
Original site: A0A315VGP4_GAMAF 
ID   A0A315VGP4_GAMAF        Unreviewed;       767 AA.
AC   A0A315VGP4;
DT   10-OCT-2018, integrated into UniProtKB/TrEMBL.
DT   10-OCT-2018, sequence version 1.
DT   24-JAN-2024, entry version 15.
DE   RecName: Full=Transcription initiation factor TFIID subunit 6 {ECO:0000256|ARBA:ARBA00040091};
GN   ORFNames=CCH79_00001992 {ECO:0000313|EMBL:PWA22628.1};
OS   Gambusia affinis (Western mosquitofish) (Heterandria affinis).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae;
OC   Gambusia.
OX   NCBI_TaxID=33528 {ECO:0000313|EMBL:PWA22628.1, ECO:0000313|Proteomes:UP000250572};
RN   [1] {ECO:0000313|EMBL:PWA22628.1, ECO:0000313|Proteomes:UP000250572}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NE01/NJP1002.9 {ECO:0000313|EMBL:PWA22628.1};
RC   TISSUE=Muscle {ECO:0000313|EMBL:PWA22628.1};
RX   PubMed=29703783;
RA   Hoffberg S.L., Troendle N.J., Glenn T.C., Mahmud O., Louha S., Chalopin D.,
RA   Bennetzen J.L., Mauricio R.;
RT   "A High-Quality Reference Genome for the Invasive Mosquitofish Gambusia
RT   affinis Using a Chicago Library.";
RL   G3 (Bethesda) 8:1855-1861(2018).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the TAF6 family.
CC       {ECO:0000256|ARBA:ARBA00007688}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PWA22628.1}.
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DR   EMBL; NHOQ01001678; PWA22628.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A315VGP4; -.
DR   STRING; 33528.ENSGAFP00000007038; -.
DR   Proteomes; UP000250572; Unassembled WGS sequence.
DR   GO; GO:0000124; C:SAGA complex; IEA:InterPro.
DR   GO; GO:0046695; C:SLIK (SAGA-like) complex; IEA:InterPro.
DR   GO; GO:0005669; C:transcription factor TFIID complex; IEA:InterPro.
DR   GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR   GO; GO:0016251; F:RNA polymerase II general transcription initiation factor activity; IEA:InterPro.
DR   GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR   CDD; cd08050; TAF6C; 1.
DR   Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR   Gene3D; 1.25.40.770; TAF6, C-terminal HEAT repeat domain; 1.
DR   InterPro; IPR016024; ARM-type_fold.
DR   InterPro; IPR009072; Histone-fold.
DR   InterPro; IPR037796; TAF6.
DR   InterPro; IPR011442; TAF6_C.
DR   InterPro; IPR046344; TAF6_C_sf.
DR   InterPro; IPR004823; TAF_TATA-bd_Histone-like_dom.
DR   PANTHER; PTHR10221; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR   PANTHER; PTHR10221:SF9; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR   Pfam; PF02969; TAF; 1.
DR   Pfam; PF07571; TAF6_C; 1.
DR   SMART; SM00803; TAF; 1.
DR   SUPFAM; SSF48371; ARM repeat; 1.
DR   SUPFAM; SSF47113; Histone-fold; 1.
PE   3: Inferred from homology;
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000250572};
KW   Signal {ECO:0000256|SAM:SignalP};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   SIGNAL          1..26
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT   CHAIN           27..767
FT                   /note="Transcription initiation factor TFIID subunit 6"
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT                   /id="PRO_5016332594"
FT   DOMAIN          134..200
FT                   /note="TATA box binding protein associated factor (TAF)
FT                   histone-like fold"
FT                   /evidence="ECO:0000259|SMART:SM00803"
FT   REGION          110..129
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          271..331
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          609..629
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          637..656
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          731..767
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        111..129
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   767 AA;  83886 MW;  B1C3DF29C3B43133 CRC64;
     MVVVKNMAMC FILCVFFIVL FQQAEAADEL RISSGLLLHR RRRGGCVGPG RFDELRAVQG
     PGAGPRAGQG LKVRVNIDRL YLWWGRLSHV WVTRVFIMVT DVRQRTLVNK QHHGDSGTQQ
     TGMAEERRQK QCSVSLPTES MKAMAESVGV GQLQEESCVA LSEEVSYRIK EIAQDALKFM
     HHGKRRKLTT SDIDNALKLK NVEPLYGFQA QEFIPFRFAS GGGRELHFYE EKEVDLSDII
     NTPLPRVPLD VSLKVYDRSF LTAHWLSIEG VQPSIPENPP PASKEQQKAE STEPLKVVKP
     GQEEKGAIQG KGQNAPAPDN KGKEKGLIRL KPRSTHELSV EQQLYYKEIT EACVGSCEAK
     RAEALQSIAT DPGLYQMLPR FSTFISEGVR VNVVQNNLAL LIYLMRMVKA LMDNPTLYLE
     KYLHELIPAV VTCIVSKQLC LRPDVDNHWA LRDFAARLMA QSCKTFSTTT NNIQSRITKT
     LTKSLLDDKT QWTTRYGSIA GLAELGADVI KTLILPRLTV EGARIKAVMD GPVVSNIDRI
     GAEHVQSLLL KHCASVIAKI RPQPDNVEQY RTDFGYLGPM LCSHVMKART QAALQAQQVN
     RTTLTITQPR STLSVSQSGL SGSGGPRTPS IIKVPSSLTL MSPRPGTPSQ PSPPATKYIV
     MGTSAGAAST QQVITLSSSQ SASPVTSTVP SATSTLQPLV KLEPGSGSGL TASRPMQKYI
     VVSLPSSASS LETKSSVLPS SISSTQVDGG IKLERSDSPA ASTQSPH
//
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