GenomeNet

Database: UniProt
Entry: A0A317JYW6_9ACTN
LinkDB: A0A317JYW6_9ACTN
Original site: A0A317JYW6_9ACTN 
ID   A0A317JYW6_9ACTN        Unreviewed;       294 AA.
AC   A0A317JYW6;
DT   10-OCT-2018, integrated into UniProtKB/TrEMBL.
DT   10-OCT-2018, sequence version 1.
DT   24-JAN-2024, entry version 24.
DE   SubName: Full=RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:PWU44243.1};
GN   ORFNames=DKL51_18380 {ECO:0000313|EMBL:RQW92762.1}, DLJ46_27005
GN   {ECO:0000313|EMBL:PWU44243.1};
OS   Micromonospora globispora.
OC   Bacteria; Actinomycetota; Actinomycetes; Micromonosporales;
OC   Micromonosporaceae; Micromonospora.
OX   NCBI_TaxID=1450148 {ECO:0000313|EMBL:PWU44243.1, ECO:0000313|Proteomes:UP000245683};
RN   [1] {ECO:0000313|EMBL:PWU44243.1, ECO:0000313|Proteomes:UP000280363}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S2901 {ECO:0000313|EMBL:RQW92762.1,
RC   ECO:0000313|Proteomes:UP000280363}, and S2904
RC   {ECO:0000313|EMBL:PWU44243.1};
RA   Carro L., Veyisoglu A., Cetin D., Klenk H.-P., Trujillo M.E., Sahin N.;
RT   "Micromonospora globispora sp. nov. and Micromonospora rugosa sp. nov.,
RT   isolated from marine sediment.";
RL   Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Proteomes:UP000245683}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S2904 {ECO:0000313|Proteomes:UP000245683};
RA   Carro L., Aysel V., Cetin D., Igual J.M., Klenk H.-P., Trujillo M.E.,
RA   Sahin N.;
RT   "Micromonospora globispora sp. nov. and Micromonospora rugosa sp. nov.,
RT   isolated from marine sediment.";
RL   Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBUNIT: Interacts transiently with the RNA polymerase catalytic core
CC       formed by RpoA, RpoB, RpoC and RpoZ (2 alpha, 1 beta, 1 beta' and 1
CC       omega subunit) to form the RNA polymerase holoenzyme that can initiate
CC       transcription. {ECO:0000256|ARBA:ARBA00011344}.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|ARBA:ARBA00010641}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PWU44243.1}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; QGSV01000343; PWU44243.1; -; Genomic_DNA.
DR   EMBL; QGGF01000365; RQW92762.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A317JYW6; -.
DR   OrthoDB; 6689546at2; -.
DR   Proteomes; UP000245683; Unassembled WGS sequence.
DR   Proteomes; UP000280363; Unassembled WGS sequence.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   GO; GO:0050896; P:response to stimulus; IEA:UniProt.
DR   Gene3D; 1.10.1740.10; -; 1.
DR   Gene3D; 3.10.450.50; -; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR032710; NTF2-like_dom_sf.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   NCBIfam; TIGR02937; sigma70-ECF; 1.
DR   PANTHER; PTHR30173:SF43; ECF RNA POLYMERASE SIGMA FACTOR SIGI-RELATED; 1.
DR   PANTHER; PTHR30173; SIGMA 19 FACTOR; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF54427; NTF2-like; 1.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE   3: Inferred from homology;
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          12..74
FT                   /note="RNA polymerase sigma-70 region 2"
FT                   /evidence="ECO:0000259|Pfam:PF04542"
FT   DOMAIN          111..161
FT                   /note="RNA polymerase sigma factor 70 region 4 type 2"
FT                   /evidence="ECO:0000259|Pfam:PF08281"
SQ   SEQUENCE   294 AA;  31967 MW;  9E20BED340A7E3F2 CRC64;
     MDEREWLTDR FEEQRPRLRA VAYRMLGSVS EADDAVQDAW LRVSRADAGA VENLAGWLTT
     VVARVCLNML RSRAHRREEP LDVHVPDPII SPTSGVDPEH DALLADSVGL ALLVVLETLT
     PAERLAFVLH DMFAVPFDEI APMIERSPAA ARQLASRARR RVQGQAPAPD PDLTRQRDVV
     NAFFAASRDG DFDALVAVLD PDVVLRADGG TGRARQTVTI HGARNVAAQA VMFTRLAPFV
     RPALINGAAG VVVAAKGQAL SVMGFTVAHE RIVAIDVLSD PERLRQLDLT VLGD
//
DBGET integrated database retrieval system