GenomeNet

Database: UniProt
Entry: A0A340XLJ4_LIPVE
LinkDB: A0A340XLJ4_LIPVE
Original site: A0A340XLJ4_LIPVE 
ID   A0A340XLJ4_LIPVE        Unreviewed;       538 AA.
AC   A0A340XLJ4;
DT   10-OCT-2018, integrated into UniProtKB/TrEMBL.
DT   10-OCT-2018, sequence version 1.
DT   24-JAN-2024, entry version 26.
DE   RecName: Full=Zinc finger CCCH-type with G patch domain-containing protein {ECO:0000256|ARBA:ARBA00022414};
GN   Name=ZGPAT {ECO:0000313|RefSeq:XP_007462298.1};
OS   Lipotes vexillifer (Yangtze river dolphin).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti;
OC   Lipotidae; Lipotes.
OX   NCBI_TaxID=118797 {ECO:0000313|Proteomes:UP000265300, ECO:0000313|RefSeq:XP_007462298.1};
RN   [1] {ECO:0000313|RefSeq:XP_007462298.1}
RP   IDENTIFICATION.
RG   RefSeq;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- SUBUNIT: Interacts with CHD4/Mi-2; the interaction is direct.
CC       {ECO:0000256|ARBA:ARBA00011506}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   RefSeq; XP_007462298.1; XM_007462236.1.
DR   AlphaFoldDB; A0A340XLJ4; -.
DR   STRING; 118797.A0A340XLJ4; -.
DR   GeneID; 103083335; -.
DR   KEGG; lve:103083335; -.
DR   CTD; 84619; -.
DR   InParanoid; A0A340XLJ4; -.
DR   OrthoDB; 3060898at2759; -.
DR   Proteomes; UP000265300; Unplaced.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0045892; P:negative regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd20384; Tudor_ZGPAT; 1.
DR   Gene3D; 2.30.30.1190; -; 1.
DR   Gene3D; 2.30.30.140; -; 1.
DR   InterPro; IPR000467; G_patch_dom.
DR   InterPro; IPR043560; ZGPAT.
DR   InterPro; IPR041367; Znf-CCCH_4.
DR   InterPro; IPR000571; Znf_CCCH.
DR   PANTHER; PTHR46297; ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR46297:SF1; ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF01585; G-patch; 1.
DR   Pfam; PF18044; zf-CCCH_4; 1.
DR   SMART; SM00443; G_patch; 1.
DR   SMART; SM00356; ZnF_C3H1; 1.
DR   SUPFAM; SSF63748; Tudor/PWWP/MBT; 1.
DR   PROSITE; PS50174; G_PATCH; 1.
DR   PROSITE; PS50103; ZF_C3H1; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW   ProRule:PRU00723}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000265300};
KW   Repressor {ECO:0000256|ARBA:ARBA00022491};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00723}.
FT   DOMAIN          175..201
FT                   /note="C3H1-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50103"
FT   DOMAIN          340..386
FT                   /note="G-patch"
FT                   /evidence="ECO:0000259|PROSITE:PS50174"
FT   ZN_FING         175..201
FT                   /note="C3H1-type"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT   REGION          94..130
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          266..285
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          390..420
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          518..538
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        521..538
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   538 AA;  57905 MW;  37DD0896BD953DDD CRC64;
     MDEESLQTAL RTYDAQLQQV ELALGTGLDP SELADLRQLQ GDLKELIELT EASLVSVRKS
     KLLAALDGGR PAQEDAEYLA FQEAVAEAVE VPVAPEAELE TVPMRETGPG PTEPGREEDE
     GEDEDGAELS GRKVNAPYYS AWGTLEYHNA MIVGTEETDD GSPGVRVLYL YPTHKSLKPC
     PFFLEGKCRF QESCRFSHGQ VVSVDELRPF QDPDLSSLQA GSACLAKRQD GLWHPARITD
     VDSGYYTVKF DSLLLKEAVV EGDSILPPLR TEPAGSSDSD GSDVDDPSYA RALGLTLAGA
     QDAPRPAGLS CCPLMPAVVE PAAADPGTCS SAFAGWEVHT RGIGSRLLAK MGYEFGKGLG
     RHAEGRVEPI HAVVLPRGKS LDQCAEVLQK RAGGSQAGAS RPPKRRGRGA GPRGRPPSRN
     VFDFLNEKLK GGAPGALEAG VAPPGRSGEE VYHASRSAKR ALSLQLFQTQ EKIEQTQRAI
     RGIQEALARN AGRHSVTAAQ LQEKLAGAQR QLGQLRAQEA GLQREQRKAD THKKMTEF
//
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