ID A0A345H568_9FLAO Unreviewed; 193 AA.
AC A0A345H568;
DT 07-NOV-2018, integrated into UniProtKB/TrEMBL.
DT 07-NOV-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE SubName: Full=ECF RNA polymerase sigma factor SigE {ECO:0000313|EMBL:AXG71706.1};
GN Name=sigE {ECO:0000313|EMBL:AXG71706.1};
GN ORFNames=KORDIASMS9_03963 {ECO:0000313|EMBL:AXG71706.1};
OS Kordia sp. SMS9.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Kordia.
OX NCBI_TaxID=2282170 {ECO:0000313|EMBL:AXG71706.1, ECO:0000313|Proteomes:UP000253780};
RN [1] {ECO:0000313|EMBL:AXG71706.1, ECO:0000313|Proteomes:UP000253780}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SMS9 {ECO:0000313|EMBL:AXG71706.1,
RC ECO:0000313|Proteomes:UP000253780};
RA Topel M., Pinder M.I.M., Johansson O.N., Kourtchenko O., Clarke A.K.,
RA Godhe A.;
RT "Genome Sequence of Kordia sp. Strain SMS9 Isolated from a Culture of the
RT Diatom Skeletonema marinoi.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
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DR EMBL; CP031153; AXG71706.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A345H568; -.
DR KEGG; kos:KORDIASMS9_03963; -.
DR OrthoDB; 9790423at2; -.
DR Proteomes; UP000253780; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR PANTHER; PTHR43133:SF67; RNA POLYMERASE SIGMA FACTOR RFAY-RELATED; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF08281; Sigma70_r4_2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000253780}.
FT DOMAIN 25..94
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 129..168
FT /note="RNA polymerase sigma factor 70 region 4 type 2"
FT /evidence="ECO:0000259|Pfam:PF08281"
SQ SEQUENCE 193 AA; 22639 MW; C633F34255C19CD2 CRC64;
MEQILQDSVL VSNYINGDEC ALGVLIERHK QRIYSFIYSK VLDRDITEDV FQDTFIKVIK
TLKKGNYNEE GKFLPWVMRI AHNLVIDHFR KNNRMPKYDN KGDFNIFSVL SDTNLNAENR
IIKTQVENDV RRLVDELPAD QKEVLLMRMY QDLSFKEISE KTGVSINTAL GRMRYALINL
RKVIDKHNIV LTN
//
