ID A0A385YT85_9BACL Unreviewed; 680 AA.
AC A0A385YT85;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 24-JAN-2024, entry version 24.
DE SubName: Full=PAS domain-containing protein {ECO:0000313|EMBL:AYC29530.1};
GN ORFNames=D3873_06390 {ECO:0000313|EMBL:AYC29530.1};
OS Paenisporosarcina cavernae.
OC Bacteria; Bacillota; Bacilli; Bacillales; Planococcaceae;
OC Paenisporosarcina.
OX NCBI_TaxID=2320858 {ECO:0000313|EMBL:AYC29530.1, ECO:0000313|Proteomes:UP000265725};
RN [1] {ECO:0000313|Proteomes:UP000265725}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K2R23-3 {ECO:0000313|Proteomes:UP000265725};
RA Zhu H.;
RL Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP032418; AYC29530.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A385YT85; -.
DR KEGG; paek:D3873_06390; -.
DR OrthoDB; 9771372at2; -.
DR Proteomes; UP000265725; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.720; NAD(P)-binding Rossmann-like Domain; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR00229; sensory_box; 2.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF51735; NAD(P)-binding Rossmann-fold domains; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000265725};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 114..191
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 234..285
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 368..598
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 680 AA; 76519 MW; 2C6D1F31BBEFACED CRC64;
MQQVLIIGGG QGGSAILRLL ASNEFFHIVG LVEINQNAPA IEIAKDLSIP ISNTWNDLMK
KPIDIIFDVT GKKDVFEQLL IERKRETVLI PGTVANMLVK LLEEKDQIMH QVKEESSIRQ
LIFDSIDEGM VGVDQKGIIN FFNKSAQKMT EIEEKAAIGK HINEVIPSSE LPRIYESGRS
EYNREMLLHN GLKIVTSRFP IIDERGNRLG SFAVFKDITE VVNLAEEITN LKEIQTMLQA
IIQSSDDAIS VVDENGKGLL INPAYTRITG LETSDVIGKP ATADISEGES IHLKVLQKKQ
PIRGVNLLVG PSKREVIVNV APILVNNRLK GSVGVIHDMT EIRHLMKELD RARSIIRTLE
SKYTFDDIVG KTNEMELSIE QAKLAAKTPV TVLLRGESGT GKELFAHAIH SASDRKYNKF
IRVNCSASEP LQLEKDLFGE EIIVSNSQEI QVRRGLLEEA NLGSIFLDEI GELSASTQAK
LLRVLQESEL TRIGGKETIH VDVRVIAATN IHMEKAMSQG IFREDLYYRL NRMPIQIPPL
RSRIQDIPLL ADKLLIKLNQ EYGRNVEQIS NRAMKKLQEY EWPGNVRELE NMISRGMIFM
NPAENTLDVQ HFPFSMFQET NLLSNSPHQT IPLTEQLEKV EKEILQHALS LAKGNKSQAA
RELDVSLRTL YYKLDKYGLT
//
