ID A0A388JMA8_CHABU Unreviewed; 2319 AA.
AC A0A388JMA8;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 22-FEB-2023, entry version 15.
DE RecName: Full=R3H domain-containing protein {ECO:0000259|PROSITE:PS51061};
GN ORFNames=CBR_g24300 {ECO:0000313|EMBL:GBG58949.1};
OS Chara braunii (Braun's stonewort).
OC Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae;
OC Chara.
OX NCBI_TaxID=69332 {ECO:0000313|EMBL:GBG58949.1, ECO:0000313|Proteomes:UP000265515};
RN [1] {ECO:0000313|EMBL:GBG58949.1, ECO:0000313|Proteomes:UP000265515}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S276 {ECO:0000313|EMBL:GBG58949.1,
RC ECO:0000313|Proteomes:UP000265515};
RX PubMed=30007417; DOI=10.1016/j.cell.2018.06.033;
RA Nishiyama T., Sakayama H., Vries J.D., Buschmann H., Saint-Marcoux D.,
RA Ullrich K.K., Haas F.B., Vanderstraeten L., Becker D., Lang D.,
RA Vosolsobe S., Rombauts S., Wilhelmsson P.K.I., Janitza P., Kern R.,
RA Heyl A., Rumpler F., Villalobos L.I.A.C., Clay J.M., Skokan R., Toyoda A.,
RA Suzuki Y., Kagoshima H., Schijlen E., Tajeshwar N., Catarino B.,
RA Hetherington A.J., Saltykova A., Bonnot C., Breuninger H., Symeonidi A.,
RA Radhakrishnan G.V., Van Nieuwerburgh F., Deforce D., Chang C., Karol K.G.,
RA Hedrich R., Ulvskov P., Glockner G., Delwiche C.F., Petrasek J.,
RA Van de Peer Y., Friml J., Beilby M., Dolan L., Kohara Y., Sugano S.,
RA Fujiyama A., Delaux P.-M., Quint M., TheiBen G., Hagemann M., Harholt J.,
RA Dunand C., Zachgo S., Langdale J., Maumus F., Straeten D.V.D., Gould S.B.,
RA Rensing S.A.;
RT "The Chara Genome: Secondary Complexity and Implications for Plant
RT Terrestrialization.";
RL Cell 174:448-464(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the NFX1 family.
CC {ECO:0000256|ARBA:ARBA00007269}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GBG58949.1}.
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DR EMBL; BFEA01000002; GBG58949.1; -; Genomic_DNA.
DR STRING; 69332.A0A388JMA8; -.
DR EnsemblPlants; GBG58949; GBG58949; CBR_g24300.
DR Gramene; GBG58949; GBG58949; CBR_g24300.
DR Proteomes; UP000265515; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:UniProtKB-UniRule.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd06008; NF-X1-zinc-finger; 9.
DR InterPro; IPR034078; NFX1_fam.
DR InterPro; IPR001374; R3H_dom.
DR InterPro; IPR036867; R3H_dom_sf.
DR InterPro; IPR000967; Znf_NFX1.
DR PANTHER; PTHR12360; NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1; 1.
DR PANTHER; PTHR12360:SF12; TRANSCRIPTIONAL REPRESSOR NF-X1; 1.
DR Pfam; PF01424; R3H; 1.
DR Pfam; PF01422; zf-NF-X1; 6.
DR SMART; SM00438; ZnF_NFX; 9.
DR SUPFAM; SSF82708; R3H domain; 1.
DR PROSITE; PS51061; R3H; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000265515};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 1938..2004
FT /note="R3H"
FT /evidence="ECO:0000259|PROSITE:PS51061"
FT REGION 1..106
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 142..162
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 196..230
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 285..309
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 318..337
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 372..457
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 608..665
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 693..723
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 747..775
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 801..1204
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1758..1779
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2105..2163
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2210..2319
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 43..57
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 75..103
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 196..221
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 608..638
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 642..660
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 747..765
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 801..847
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 855..871
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 958..1011
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1080..1174
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2105..2119
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2128..2144
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2248..2282
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 2319 AA; 244812 MW; 5A033C70FCD8D674 CRC64;
MPTSMIGLSI SEQSGGGDVA EAARQVCSSP AIRRGGGRGT RSRSDGGGTN SVLSPKPVVQ
QVWKEKRPSV DGGCNPGSVG TTGTEAPTPT SSTLTSPLTR GSGSGSGCAD LPLPGVSTFT
ATAVAVSATA VPVSRPLDFK LTDGARSEGG EAATGGGGGG GGRCGGAIFS SEASMTKSRE
CPNYERSVVS GISSNVVGAR NDGEKSASVS VVTSSGGSIS GKRDSGAPAE RGIAESVAIA
GAAAGGGNQG SEAGTADTTS VAAGMVALGG FSDSAVLSRP ASRSAAGAVS GNDAGGLTTD
GSQAASAGGM GVSVRAMEDR TQCPSNSASA VGAGKGFNGV GEDKKINGGE GGVTVPVKLS
VSVIKDPGGK YAWRARNSPT TPDNRGGGGG GVVGGGVMGE GVRREQDEPA PTPRRLSEVQ
SSGGGESEVI PSDRGPILPS PRKADGSDRG VGGGGWNGSG RVVGREEAIP APLFVPQPVP
GTSLVQVGNI WNKKTNVRGH RRSVSTSAVD LQVVLPRGPN ERAERHERGG IRRQFPPQPP
SLINGGFRDP LAQQQQNVPV GMQQGGVGGA GLNAPAAANG GPAPLNGAMG GGLGENGVNS
VSTNVRVQQQ RQQPGANARH VRSATWDGQN SRSGESSGGG SIRRVDPDHT HSEWRRGRNP
AEVDGQLMAM DRLEGIGGGG GIPLPLQAHL GTSIPSPLPQ QRGHYRRMSW SQESRHPQHQ
QQQLMMGMVP EHRDGHDATM HLRQDKERGM VMPAPEQDRQ SEQRDGSRQS GVVTQLLQQQ
QQQQQQTQLA LQQQQLLAHQ KHQQQLTHHH QQQQLAHQQQ QQLAHQQQQQ LAHQQQHQPQ
QWYGNSSGYG GREVGEKMGR TEDRGDDSGW EGHHQNLQAA GDDGLTGGGR AHAPSPALRG
REGGDAMGNR VSGGSMGGAD VVNNVERIHR RSRSSGGFAV EEQQMGVETG EAGTPSSKSR
SEYERMKRET GDRSRDGSGY DGPQDEDEKG SGDRINGRNK EKVKEGEAEV ERYQQQLQQV
PPWVTRGGAP SVAAASAGAG RGNSTVQTRR GRARSDSFDW GGARHRSDMS SNWRSGGPRD
GEESAGHHQF FHGDEKDWSS ERERVRDRGE ERLDRDEWLA MERVERRERE DPQIPRRVER
EDKQQRWVGM GENSDRERDP PPPPPERRSG GGSIRRKEPS SLSAIPPVSP VVGGPVGASP
RPSRLMFGRA VPQLVQELEE KLMKGQVECM ICCEIVGRSS SVWSCSSCYA IFHLSCTRKW
ARVPVATASD LSAAGGQQQP GGSGEGTWRC PGCQTPQSIR ASELRYRCFC GQREDPPNDP
YLTPHSCGDA CRKPLARPTS DGGYRCPHVC TMRCHPGPHA PCAAMAPTVF CYCRKSEITR
KCADYEKHGR SCGSTCMRSL ACGRHTCPRV CHEGACGVCE VTVKTRCFCG KKEELQSCGR
IEFKGEFPTS GGVFSCMERC SKILGCGNHR CERFCHPGPC GDCRLLPSLL LRCPCGKEEI
KNLLGGMDRK GCLDPVPTCE GVCEKLLACG KHRCEQTCHN GACPPCEVPM EQKCRCVLAV
RIVPCFQLDV GTVFTCDRKC GKLKNCRRHR CSAVCCAAPP VDSPGPTAPV PGDSHFCMIV
CGKKLRCGRH TCQELCHPGH CPPCMDSVMT ELECACGRTS IPPPVPCGTP LPACPFPCSV
PQPCGHPSTH LCHFGDCPPC TVAVAKECVG GHVVLRGVPC GSKDIRCNAV CGKLRRCGIH
TCTRTCHRPP CDAVEIEGEG DHTSPGSRDG FSISRSSRRL PCGQTCGQPR RDCEHFCKAV
CHPGEACPNS RCTAVVAIVC LCGRLKAQVQ CCAGGGDDDD GFDEAAFVSQ LGLKLQPVQQ
SADGASPGYV PLGRRKIACD DECAKCEKKR ILANAFGVSM APGLEGEEGT AGGTESGAML
MEMIRRDPIW VSAVELRLQF LLLGSRNALK MSTASATSGM RVHVFRYLPK ERRAAIHELA
ARWLMESISV GWEPKRFIVV YTTAKSRAPL RGLISKPGSS VPAVGHAVAP LPNGEVDMDP
RCVISFFDLP RDADISAGIL RFAGDCELVW LNDRNALSVF SNPIRATTAL RYLDHASAYW
GAIAQQSQPS QSSSAGASTG MRVWGKGPSV QASSSSSSGQ PAHGSLAMRR NRSGSGASAA
WHADAWSENE TQADLEGISG GSRADPLTQV WKQEQSGLAQ SNFWSALAEE GDGDATEENG
EGSTAATPRT EGGDGQRGSH SRSDSGESSK KGASGLNAAG TVPSSPSGGG SPLSTSSVII
RNVGDDNKWG AGGLALAGLG DGCGKGDDEE DWESVLDDH
//
