ID A0A388KQS1_CHABU Unreviewed; 2291 AA.
AC A0A388KQS1;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CBR_g11926 {ECO:0000313|EMBL:GBG72348.1};
OS Chara braunii (Braun's stonewort).
OC Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae;
OC Chara.
OX NCBI_TaxID=69332 {ECO:0000313|EMBL:GBG72348.1, ECO:0000313|Proteomes:UP000265515};
RN [1] {ECO:0000313|EMBL:GBG72348.1, ECO:0000313|Proteomes:UP000265515}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S276 {ECO:0000313|EMBL:GBG72348.1,
RC ECO:0000313|Proteomes:UP000265515};
RX PubMed=30007417; DOI=10.1016/j.cell.2018.06.033;
RA Nishiyama T., Sakayama H., Vries J.D., Buschmann H., Saint-Marcoux D.,
RA Ullrich K.K., Haas F.B., Vanderstraeten L., Becker D., Lang D.,
RA Vosolsobe S., Rombauts S., Wilhelmsson P.K.I., Janitza P., Kern R.,
RA Heyl A., Rumpler F., Villalobos L.I.A.C., Clay J.M., Skokan R., Toyoda A.,
RA Suzuki Y., Kagoshima H., Schijlen E., Tajeshwar N., Catarino B.,
RA Hetherington A.J., Saltykova A., Bonnot C., Breuninger H., Symeonidi A.,
RA Radhakrishnan G.V., Van Nieuwerburgh F., Deforce D., Chang C., Karol K.G.,
RA Hedrich R., Ulvskov P., Glockner G., Delwiche C.F., Petrasek J.,
RA Van de Peer Y., Friml J., Beilby M., Dolan L., Kohara Y., Sugano S.,
RA Fujiyama A., Delaux P.-M., Quint M., TheiBen G., Hagemann M., Harholt J.,
RA Dunand C., Zachgo S., Langdale J., Maumus F., Straeten D.V.D., Gould S.B.,
RA Rensing S.A.;
RT "The Chara Genome: Secondary Complexity and Implications for Plant
RT Terrestrialization.";
RL Cell 174:448-464(2018).
CC -!- SIMILARITY: Belongs to the SBNO family.
CC {ECO:0000256|ARBA:ARBA00006992}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GBG72348.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; BFEA01000163; GBG72348.1; -; Genomic_DNA.
DR STRING; 69332.A0A388KQS1; -.
DR EnsemblPlants; GBG72348; GBG72348; CBR_g11926.
DR Gramene; GBG72348; GBG72348; CBR_g11926.
DR Proteomes; UP000265515; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR GO; GO:0048583; P:regulation of response to stimulus; IEA:UniProt.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.10.20.370; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR041577; RT_RNaseH_2.
DR InterPro; IPR026937; SBNO_Helicase_C_dom.
DR InterPro; IPR026741; SNO.
DR InterPro; IPR039187; SNO_AAA.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR12706:SF13; PROTEIN FORGETTER 1; 1.
DR PANTHER; PTHR12706; STRAWBERRY NOTCH-RELATED; 1.
DR Pfam; PF13872; AAA_34; 1.
DR Pfam; PF13871; Helicase_C_4; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF00628; PHD; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000265515};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 721..771
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 1756..1916
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 98..159
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 181..202
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 649..714
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1192..1212
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1268..1295
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1940..1967
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 98..156
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 649..677
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 691..714
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 2291 AA; 254437 MW; 1242349C87E67830 CRC64;
MATQVQCAGC RRILNVPAGL YEFACPKCSL LQALPPQLRQ GPAAGGVSGA KIQLPCANCR
AILNVPHGLH RFRCPQCHVE LAVDPDKLAA YLSSMMGSNR SGPSADINGR LTDGSTHSYA
GHNSNTHAAH SHSHVPAHSH SQTHGIPTNS HGHGIGSGTT IEALSKRGRD LISGDAAIAG
GQTVGLLPPP AKRSQPEPQE EEINEVALEV EQEEDEDGPS GETFTDYRPS KLAYGSPHPD
PVVETASLAA VEPPDPTYDL VMRDDPETMR ALSCLQLETV VYACQRHNFV LKDGTRAGFF
IGDGAGVGKG RTVAGVIKEN WKHGRRKALW LSVASDLKYD AIRDLEDVGL TEAEVHPLNK
LPYGKLDSTK VGVKEGVIFL TYSSLIAASE KGHTRLRQLV NWCGPDFDGL IVFDECHKAK
NLVPETGSSG TKTGEAVLEL QAKLPNARVV YCSATGASEP RNLGYMVRLG LWGPGTDLPD
FSAFLGALEK RGVGALELVA MDMKARGVYL CRTLSFSGAE FDIVEVALEP KMQEMYTKAA
QFWAELRVDM MGAVDSTAEG VKKSNMLWRF YWATHQRFFR HMCMSAKVPA VVRMSHEALC
EGKCVVIGLQ STGEARTEEA VSKYGMELDD FVSGPRELLI KLVEDHYPVP PEPKHLEDED
AKKEMKKKPE RTTVSTRGRI RKTVRYKGFS DDDEEDEEER AAEDAFSAEE SESDESDASD
FKVCSICATE YDDHSLLECA CCRKCFHLEC LAPPLASHPE GDWLCPDCDS NTAEIKAERK
AYIAELWRRY AAAMQRKAEI LDCIKKLDLP NNPLDDIIDQ LGGPDNVAEM TGRKGMLLRS
ANGKGVIYQS RNTKEVSMEM INIHEKQQFM EGHKLVAVIS EAASAGISLQ ADRRAPNKRR
RVHITLELPW SADRAIQQFG RTHRSNQANA PQFRLLFTTL GGERRFASVV AKRLECLGAL
TQGDRRAGGP SLREYNYDSI YGKRALGLLY KAVLEQQTLS VLPPDVPEGE AGKEASQLYF
ATIRAALISC GIIKDATASA SDVQGITNGG LGMLGRPSGK ISDADMHDVG RFLNRVLGLE
QRIQNMLFDY FVLIFEDLVR TARKEGQFDS GIIDVRANHI EIASGPKVER RVMLVVPKQR
LVITIGVRSS GEIISVVGVN YLRNQLAGEA NINMHNFPSF SKKALDLEAK IGHGQTPTTD
GRRKSLPPNW KAKGPIMFVD NDGSTIALDD NDGSTIELDD NFQEGVGSEA GSVEASGGGV
VVVVAQKGKA TGGRRGGSRS RSQVDPNAPP WEKAGLGEDV WRDRYTRQAC IRCGQYGHNQ
FKCCNKKVTE KIPPTMGQAL GSSTPVGSNV ASTSGTAPGN TTVEEHVAYL DKVLSLLRQH
KFKINGEKCE FGPTRTLYLG HEISADDMKP DDAKVASIRG WPRPQSVTEM RSFLGMTGYY
HNFVKNYSIV AAPLTDLTRL DIPWEWTDRC EAAIRQLKHA LTHHEVLKLP DRDKSFVVTT
NASQYGIGAV LAQQEGKKFR PVEYMSKKMP SQKLTKSTYE KELYAIYKAL THWRHYLLGR
FFYVRADHQT LKWMRTQPVL SDALNHWMIE VIEQYDFEPQ YIKGECNKVA DALSRRPDFS
GALITEFGLA DDVTQSMVEA YREDQFMSEI IRRLEAKDKI TSAESELVNG LLFLENEGNK
RLCVPNRESL RSLFLGECHD ATGHFGFKKT AANLLQQFWW PTMLRDAKLY VETCQVCQRD
KPRTQAPLGL LKPLPIPERP GESLSMDFMD TLVTSKSGMR HIFVIVDRFS KYARLVAMPE
TAKIEYVIRL FKENWVRDFG LPKSIVSDRD VRFTSELWKA AAAEQGTQLQ ITSGNHPEAN
GQAEQLNRAV QHLLRHYIKP NQVNWDEKLA LIASLYNNAV HSATGVSPNS LLLTFKPRLP
VDFLLPDNQS AAPPGTLDFA YRYEQRMQQA VEQMHKAQAA MIETENKHRR PSSFQVGDRV
YVKSSELGQE QGISRKLMPQ YIGPWEVLDV VGEDLDGPSY VIRIPGHLRT YPVFHASKLA
PFRETDQFPS RRSMLPPTMD GEVDINDIVD HREMPTVCID PMSGAATLHY VVKLDRGLAW
ERANEILETA AKEDGSVKDN GFYKSVREWL GRSHYLLAVA NSISGSGTRM FKIYRPPSGA
APREMPEAEF KSKYKKLSSK DTAADGWKRE YQILANQCMH GPKCKIGPIC TVGRRVQEMH
LLGGLILPVW GTVESVLARQ ERITHRRLRV VQLETTDDGR RLVGIHVPNS AIHAILSQLE
SEHRSSTNRL V
//
