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Database: UniProt
Entry: A0A388LF95_CHABU
LinkDB: A0A388LF95_CHABU
Original site: A0A388LF95_CHABU 
ID   A0A388LF95_CHABU        Unreviewed;      1381 AA.
AC   A0A388LF95;
DT   05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT   05-DEC-2018, sequence version 1.
DT   13-SEP-2023, entry version 18.
DE   RecName: Full=Integrase catalytic domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=CBR_g31540 {ECO:0000313|EMBL:GBG80984.1};
OS   Chara braunii (Braun's stonewort).
OC   Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae;
OC   Chara.
OX   NCBI_TaxID=69332 {ECO:0000313|EMBL:GBG80984.1, ECO:0000313|Proteomes:UP000265515};
RN   [1] {ECO:0000313|EMBL:GBG80984.1, ECO:0000313|Proteomes:UP000265515}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S276 {ECO:0000313|EMBL:GBG80984.1,
RC   ECO:0000313|Proteomes:UP000265515};
RX   PubMed=30007417; DOI=10.1016/j.cell.2018.06.033;
RA   Nishiyama T., Sakayama H., Vries J.D., Buschmann H., Saint-Marcoux D.,
RA   Ullrich K.K., Haas F.B., Vanderstraeten L., Becker D., Lang D.,
RA   Vosolsobe S., Rombauts S., Wilhelmsson P.K.I., Janitza P., Kern R.,
RA   Heyl A., Rumpler F., Villalobos L.I.A.C., Clay J.M., Skokan R., Toyoda A.,
RA   Suzuki Y., Kagoshima H., Schijlen E., Tajeshwar N., Catarino B.,
RA   Hetherington A.J., Saltykova A., Bonnot C., Breuninger H., Symeonidi A.,
RA   Radhakrishnan G.V., Van Nieuwerburgh F., Deforce D., Chang C., Karol K.G.,
RA   Hedrich R., Ulvskov P., Glockner G., Delwiche C.F., Petrasek J.,
RA   Van de Peer Y., Friml J., Beilby M., Dolan L., Kohara Y., Sugano S.,
RA   Fujiyama A., Delaux P.-M., Quint M., TheiBen G., Hagemann M., Harholt J.,
RA   Dunand C., Zachgo S., Langdale J., Maumus F., Straeten D.V.D., Gould S.B.,
RA   Rensing S.A.;
RT   "The Chara Genome: Secondary Complexity and Implications for Plant
RT   Terrestrialization.";
RL   Cell 174:448-464(2018).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:GBG80984.1}.
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DR   EMBL; BFEA01000362; GBG80984.1; -; Genomic_DNA.
DR   EnsemblPlants; GBG80984; GBG80984; CBR_g31540.
DR   Gramene; GBG80984; GBG80984; CBR_g31540.
DR   Proteomes; UP000265515; Unassembled WGS sequence.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 1.10.340.70; -; 1.
DR   Gene3D; 2.40.50.40; -; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR016197; Chromo-like_dom_sf.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR041588; Integrase_H2C2.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041577; RT_RNaseH_2.
DR   PANTHER; PTHR24559:SF425; RT_RNASEH DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR   Pfam; PF17921; Integrase_H2C2; 1.
DR   Pfam; PF17919; RT_RNaseH_2; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   SUPFAM; SSF54160; Chromo domain-like; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000265515}.
FT   DOMAIN          508..719
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|PROSITE:PS50878"
FT   DOMAIN          995..1155
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   REGION          1..69
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          523..544
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1285..1304
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1361..1381
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        34..54
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1381 AA;  156113 MW;  47D704BA26605F9C CRC64;
     MPAGPASEQQ PRRSKRITDL QQRQQPPVPQ PPQTSTQMAN MPHSGSSSEG LTASNAEPLP
     VCPVQGSNKP LPDFIQRMQD YTAALTQVKE QQEAAAAERL RLVEEAAAQT RRQAEADQLA
     IDQLNAGSAE LVSANQAQWT AVLNGMRYVP VPGSEPTQVQ QERQDLADIL LHTMRAVIWN
     SSMGELHCRS TLQLQHHLSH NVKILAAAVK VADNQLKQLD ACIATLEARP PQAAPGCTPD
     MKDTTKQLNG RIHHVVNLIG DIGVFNGPDT ISSTVAAIKT DITKLQTKPD ATTKNYKMPH
     FDISKFDDHS KTDALAWWQR FLTEASCRTV PDDYLMKALY LQLIGGAQAW MNHLAATHTC
     TIAELHTHIT WKDFENLWFT RFMVRNVMKA AMNEVYTCSQ WSMPTRDWTT KWQKIVTTPR
     FDLSFPNQRS EFFSRSCAGL RSALGNEYDY TSFQAILDRA NLVIQTDDKA ANEKQSQPHY
     VAKQGCQRPA HNNAVIYEET DDLHAAAATL SDGGIVAALP PKRPKRVRKN KATQETASTG
     TGQQPWTAYN ITKELFSTSG RRTKIYGYAS TIANLTHKTV KNAGPLPRID DLLERLGGAM
     YFSKLDLKSG YHQIEIQPQD RYKTAFKTRY GHFEWVVMPF GLTNAPATFQ AAMTTEFHDL
     LDRSVLIYLD DILVYSRTLD EHIVHLRVVL DRLRLAKYRA NLDKCEFAKQ ELEYLGHFVT
     PKSIRPLADK IQAIVDWPEP RCMTDVRSFM GLAGYYQRFV ESYSKVAAPL SRLQSPKVPF
     EFDDAARGAF TTLKAAMQAA PALRLYDPTL PTQVTTDASG YGIGAVLEQC HEDGWHPVEY
     FSQKVPLVNT LDDARKKELL AFVTVLKRWR RFLLDRRRYK SDPTYSTLYA ELSSDHPPAS
     QYRISDGFLL LHTRGKDLLV VPQDRILRTR LLGEFHDARL SAHLGVNCTL ARLRQRFHWP
     DVLHDVTRYI ESCAVCHRNK GRSRVPFGEL KPLPIPRAPR LSIAMDVTGP FPRDRHDHDG
     ILTVVDRLSK YARFLPCKYH AAAPELARLL HTGWITNQGV PEDIVSDRDT RFMSAFWTSL
     IAESGTTMKP SSARQPQTDG QTERAHQTAQ MMLRTLIRPD QKDWVDRLPD IEFAYNTSVH
     PXICVTXFEL HHGGEKARIF ADLLLPQAAD IDIPCSPASV RKYRDLLIKA RANMQKAQIR
     MQQXANRRRL PCPLREGDLV WVLSEXFALE QDVSXKLLPK WFEPWEVTSA VGDDPAGPSF
     VINIPPHLTV HRVFHASKLA IYTPPSADEF PGRRSQDPPS MDGHQEVDRV ITHRKYGNKS
     MQYKVTFKQC APDDTRWISS ADLQTSAPLI FANYEKTRLA KEAARPARPT PISDRQLRPR
     R
//
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