ID A0A388LF95_CHABU Unreviewed; 1381 AA.
AC A0A388LF95;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 13-SEP-2023, entry version 18.
DE RecName: Full=Integrase catalytic domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CBR_g31540 {ECO:0000313|EMBL:GBG80984.1};
OS Chara braunii (Braun's stonewort).
OC Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae;
OC Chara.
OX NCBI_TaxID=69332 {ECO:0000313|EMBL:GBG80984.1, ECO:0000313|Proteomes:UP000265515};
RN [1] {ECO:0000313|EMBL:GBG80984.1, ECO:0000313|Proteomes:UP000265515}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S276 {ECO:0000313|EMBL:GBG80984.1,
RC ECO:0000313|Proteomes:UP000265515};
RX PubMed=30007417; DOI=10.1016/j.cell.2018.06.033;
RA Nishiyama T., Sakayama H., Vries J.D., Buschmann H., Saint-Marcoux D.,
RA Ullrich K.K., Haas F.B., Vanderstraeten L., Becker D., Lang D.,
RA Vosolsobe S., Rombauts S., Wilhelmsson P.K.I., Janitza P., Kern R.,
RA Heyl A., Rumpler F., Villalobos L.I.A.C., Clay J.M., Skokan R., Toyoda A.,
RA Suzuki Y., Kagoshima H., Schijlen E., Tajeshwar N., Catarino B.,
RA Hetherington A.J., Saltykova A., Bonnot C., Breuninger H., Symeonidi A.,
RA Radhakrishnan G.V., Van Nieuwerburgh F., Deforce D., Chang C., Karol K.G.,
RA Hedrich R., Ulvskov P., Glockner G., Delwiche C.F., Petrasek J.,
RA Van de Peer Y., Friml J., Beilby M., Dolan L., Kohara Y., Sugano S.,
RA Fujiyama A., Delaux P.-M., Quint M., TheiBen G., Hagemann M., Harholt J.,
RA Dunand C., Zachgo S., Langdale J., Maumus F., Straeten D.V.D., Gould S.B.,
RA Rensing S.A.;
RT "The Chara Genome: Secondary Complexity and Implications for Plant
RT Terrestrialization.";
RL Cell 174:448-464(2018).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GBG80984.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; BFEA01000362; GBG80984.1; -; Genomic_DNA.
DR EnsemblPlants; GBG80984; GBG80984; CBR_g31540.
DR Gramene; GBG80984; GBG80984; CBR_g31540.
DR Proteomes; UP000265515; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR24559:SF425; RT_RNASEH DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000265515}.
FT DOMAIN 508..719
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 995..1155
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 1..69
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 523..544
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1285..1304
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1361..1381
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 34..54
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1381 AA; 156113 MW; 47D704BA26605F9C CRC64;
MPAGPASEQQ PRRSKRITDL QQRQQPPVPQ PPQTSTQMAN MPHSGSSSEG LTASNAEPLP
VCPVQGSNKP LPDFIQRMQD YTAALTQVKE QQEAAAAERL RLVEEAAAQT RRQAEADQLA
IDQLNAGSAE LVSANQAQWT AVLNGMRYVP VPGSEPTQVQ QERQDLADIL LHTMRAVIWN
SSMGELHCRS TLQLQHHLSH NVKILAAAVK VADNQLKQLD ACIATLEARP PQAAPGCTPD
MKDTTKQLNG RIHHVVNLIG DIGVFNGPDT ISSTVAAIKT DITKLQTKPD ATTKNYKMPH
FDISKFDDHS KTDALAWWQR FLTEASCRTV PDDYLMKALY LQLIGGAQAW MNHLAATHTC
TIAELHTHIT WKDFENLWFT RFMVRNVMKA AMNEVYTCSQ WSMPTRDWTT KWQKIVTTPR
FDLSFPNQRS EFFSRSCAGL RSALGNEYDY TSFQAILDRA NLVIQTDDKA ANEKQSQPHY
VAKQGCQRPA HNNAVIYEET DDLHAAAATL SDGGIVAALP PKRPKRVRKN KATQETASTG
TGQQPWTAYN ITKELFSTSG RRTKIYGYAS TIANLTHKTV KNAGPLPRID DLLERLGGAM
YFSKLDLKSG YHQIEIQPQD RYKTAFKTRY GHFEWVVMPF GLTNAPATFQ AAMTTEFHDL
LDRSVLIYLD DILVYSRTLD EHIVHLRVVL DRLRLAKYRA NLDKCEFAKQ ELEYLGHFVT
PKSIRPLADK IQAIVDWPEP RCMTDVRSFM GLAGYYQRFV ESYSKVAAPL SRLQSPKVPF
EFDDAARGAF TTLKAAMQAA PALRLYDPTL PTQVTTDASG YGIGAVLEQC HEDGWHPVEY
FSQKVPLVNT LDDARKKELL AFVTVLKRWR RFLLDRRRYK SDPTYSTLYA ELSSDHPPAS
QYRISDGFLL LHTRGKDLLV VPQDRILRTR LLGEFHDARL SAHLGVNCTL ARLRQRFHWP
DVLHDVTRYI ESCAVCHRNK GRSRVPFGEL KPLPIPRAPR LSIAMDVTGP FPRDRHDHDG
ILTVVDRLSK YARFLPCKYH AAAPELARLL HTGWITNQGV PEDIVSDRDT RFMSAFWTSL
IAESGTTMKP SSARQPQTDG QTERAHQTAQ MMLRTLIRPD QKDWVDRLPD IEFAYNTSVH
PXICVTXFEL HHGGEKARIF ADLLLPQAAD IDIPCSPASV RKYRDLLIKA RANMQKAQIR
MQQXANRRRL PCPLREGDLV WVLSEXFALE QDVSXKLLPK WFEPWEVTSA VGDDPAGPSF
VINIPPHLTV HRVFHASKLA IYTPPSADEF PGRRSQDPPS MDGHQEVDRV ITHRKYGNKS
MQYKVTFKQC APDDTRWISS ADLQTSAPLI FANYEKTRLA KEAARPARPT PISDRQLRPR
R
//