ID A0A388LFA6_CHABU Unreviewed; 819 AA.
AC A0A388LFA6;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE RecName: Full=Integrase catalytic domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CBR_g31545 {ECO:0000313|EMBL:GBG80989.1};
OS Chara braunii (Braun's stonewort).
OC Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae;
OC Chara.
OX NCBI_TaxID=69332 {ECO:0000313|EMBL:GBG80989.1, ECO:0000313|Proteomes:UP000265515};
RN [1] {ECO:0000313|EMBL:GBG80989.1, ECO:0000313|Proteomes:UP000265515}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S276 {ECO:0000313|EMBL:GBG80989.1,
RC ECO:0000313|Proteomes:UP000265515};
RX PubMed=30007417; DOI=10.1016/j.cell.2018.06.033;
RA Nishiyama T., Sakayama H., Vries J.D., Buschmann H., Saint-Marcoux D.,
RA Ullrich K.K., Haas F.B., Vanderstraeten L., Becker D., Lang D.,
RA Vosolsobe S., Rombauts S., Wilhelmsson P.K.I., Janitza P., Kern R.,
RA Heyl A., Rumpler F., Villalobos L.I.A.C., Clay J.M., Skokan R., Toyoda A.,
RA Suzuki Y., Kagoshima H., Schijlen E., Tajeshwar N., Catarino B.,
RA Hetherington A.J., Saltykova A., Bonnot C., Breuninger H., Symeonidi A.,
RA Radhakrishnan G.V., Van Nieuwerburgh F., Deforce D., Chang C., Karol K.G.,
RA Hedrich R., Ulvskov P., Glockner G., Delwiche C.F., Petrasek J.,
RA Van de Peer Y., Friml J., Beilby M., Dolan L., Kohara Y., Sugano S.,
RA Fujiyama A., Delaux P.-M., Quint M., TheiBen G., Hagemann M., Harholt J.,
RA Dunand C., Zachgo S., Langdale J., Maumus F., Straeten D.V.D., Gould S.B.,
RA Rensing S.A.;
RT "The Chara Genome: Secondary Complexity and Implications for Plant
RT Terrestrialization.";
RL Cell 174:448-464(2018).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GBG80989.1}.
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DR EMBL; BFEA01000362; GBG80989.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A388LFA6; -.
DR EnsemblPlants; GBG80989; GBG80989; CBR_g31545.
DR Gramene; GBG80989; GBG80989; CBR_g31545.
DR Proteomes; UP000265515; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd00024; CD_CSD; 1.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR023779; Chromodomain_CS.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR041373; RT_RNaseH.
DR PANTHER; PTHR45835:SF106; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR45835; YALI0A06105P; 1.
DR Pfam; PF00385; Chromo; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR Pfam; PF00665; rve; 1.
DR SMART; SM00298; CHROMO; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS00598; CHROMO_1; 1.
DR PROSITE; PS50013; CHROMO_2; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000265515}.
FT DOMAIN 385..550
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT DOMAIN 709..771
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT REGION 89..128
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 766..819
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 96..111
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 112..127
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 805..819
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 819 AA; 93586 MW; D16C87E3CDCE148E CRC64;
MDDAKITAIA EWPAPTSAKQ LRSFLGLTSY YSNFIRGYAR YSYVLTSTLL RKNPPWACSP
LHEDAFRPFI LTTDASDFAV GAVLSQVFPS SPDSSHPRIP RFPPPTPTTA SRLTPTRPAT
NEPSIDYSPT IVEDGTVKSR LGDCPIAFYS CQLLPAEINY TADEHEVLAV VYAARHWRHY
LHGAPFTVRT DNSVVQAFLT KPKLTPRQAR WWRDLSEFSF TTEHIKGETN RVADALSRRP
DHDQEHIQLS SISVSTIHHS VIDEFCTQYR HYPDYRDIHE TLRSGNLKTV PNYSLGDNGL
IYWHGSQGTR EPRICVPSTG QLRFRAVAEF HDQAAAGHMG FHKTLARVSR LYVWPKRKDF
VKDYVAECPT CQEVNSANHL PYGLLQPLPI PEGRWQSISM DFIGPLRPPT PCGHDAIMVV
VDRFTKRAHF VPCRYAISAR EVADIVFDRV MRDHGLPLSI ISDRDPRFTS QFWRRLHEVY
GTQLRFSSSY HPQTDGRTEI TNRTLGDILR KIVRDDKQWD LHLAHVEIAY NHAVSPTTGM
SPYYCDLGYH PRVPADFLRP SQMHPDTSCP ALDDSVAHMT SIMKTAHEHI AASQTRMAAR
ANRSRMDHPF KVGDDVLIDA RHLQLKAGTL RKFRRRFFGP CRILQAVGSD SASSPVNFRV
KLPDYLRQAR AHDVYHVSLL RPYRRPFERF AGRPYERPPP IMVDGHEEFL VSGIIGRRVT
DDNPPHVEYL VRWKGYPDEE VTWEPLEHLQ HARMLVRAYD RARRAGFTAP PQPIDPPPSH
PAEETAEVEP APSEAHLQQQ PDASERPQRT RRRPARYDD
//
