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Database: UniProt
Entry: A0A388LKI5_CHABU
LinkDB: A0A388LKI5_CHABU
Original site: A0A388LKI5_CHABU 
ID   A0A388LKI5_CHABU        Unreviewed;      1345 AA.
AC   A0A388LKI5;
DT   05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT   05-DEC-2018, sequence version 1.
DT   24-JAN-2024, entry version 19.
DE   RecName: Full=Reverse transcriptase {ECO:0008006|Google:ProtNLM};
GN   ORFNames=CBR_g36350 {ECO:0000313|EMBL:GBG82819.1};
OS   Chara braunii (Braun's stonewort).
OC   Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae;
OC   Chara.
OX   NCBI_TaxID=69332 {ECO:0000313|EMBL:GBG82819.1, ECO:0000313|Proteomes:UP000265515};
RN   [1] {ECO:0000313|EMBL:GBG82819.1, ECO:0000313|Proteomes:UP000265515}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S276 {ECO:0000313|EMBL:GBG82819.1,
RC   ECO:0000313|Proteomes:UP000265515};
RX   PubMed=30007417; DOI=10.1016/j.cell.2018.06.033;
RA   Nishiyama T., Sakayama H., Vries J.D., Buschmann H., Saint-Marcoux D.,
RA   Ullrich K.K., Haas F.B., Vanderstraeten L., Becker D., Lang D.,
RA   Vosolsobe S., Rombauts S., Wilhelmsson P.K.I., Janitza P., Kern R.,
RA   Heyl A., Rumpler F., Villalobos L.I.A.C., Clay J.M., Skokan R., Toyoda A.,
RA   Suzuki Y., Kagoshima H., Schijlen E., Tajeshwar N., Catarino B.,
RA   Hetherington A.J., Saltykova A., Bonnot C., Breuninger H., Symeonidi A.,
RA   Radhakrishnan G.V., Van Nieuwerburgh F., Deforce D., Chang C., Karol K.G.,
RA   Hedrich R., Ulvskov P., Glockner G., Delwiche C.F., Petrasek J.,
RA   Van de Peer Y., Friml J., Beilby M., Dolan L., Kohara Y., Sugano S.,
RA   Fujiyama A., Delaux P.-M., Quint M., TheiBen G., Hagemann M., Harholt J.,
RA   Dunand C., Zachgo S., Langdale J., Maumus F., Straeten D.V.D., Gould S.B.,
RA   Rensing S.A.;
RT   "The Chara Genome: Secondary Complexity and Implications for Plant
RT   Terrestrialization.";
RL   Cell 174:448-464(2018).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:GBG82819.1}.
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DR   EMBL; BFEA01000419; GBG82819.1; -; Genomic_DNA.
DR   EnsemblPlants; GBG82819; GBG82819; CBR_g36350.
DR   Gramene; GBG82819; GBG82819; CBR_g36350.
DR   Proteomes; UP000265515; Unassembled WGS sequence.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd00024; CD_CSD; 1.
DR   CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 1.10.340.70; -; 1.
DR   Gene3D; 2.40.50.40; -; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR016197; Chromo-like_dom_sf.
DR   InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR   InterPro; IPR023780; Chromo_domain.
DR   InterPro; IPR023779; Chromodomain_CS.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR041588; Integrase_H2C2.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041373; RT_RNaseH.
DR   InterPro; IPR041577; RT_RNaseH_2.
DR   PANTHER; PTHR24559:SF425; RT_RNASEH DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR   Pfam; PF00385; Chromo; 1.
DR   Pfam; PF17921; Integrase_H2C2; 1.
DR   Pfam; PF17917; RT_RNaseH; 1.
DR   Pfam; PF17919; RT_RNaseH_2; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   SMART; SM00298; CHROMO; 1.
DR   SUPFAM; SSF54160; Chromo domain-like; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS00598; CHROMO_1; 1.
DR   PROSITE; PS50013; CHROMO_2; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000265515}.
FT   DOMAIN          321..500
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|PROSITE:PS50878"
FT   DOMAIN          911..1076
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   DOMAIN          1235..1297
FT                   /note="Chromo"
FT                   /evidence="ECO:0000259|PROSITE:PS50013"
FT   REGION          1..20
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          128..157
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          199..241
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          616..643
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1286..1345
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..17
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        206..238
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        616..633
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1345 AA;  153227 MW;  99FAC9F84F0EE8DE CRC64;
     MKGSSFEEIN AAPSTSQGDF VRPRVVEEAR LATSGSHSPI SVTLGDNKTQ RFFDQTVPDL
     HFSLTLQPPD STQAPRRYHS SAYFDVLETG YDFILGTPWS RRFRSTEAEW AFETLILKTK
     CGQTHLVPFI GTTGGTPPNL PPQDPRPSGS HPDISFTSPR QFAHFIRQED VTLYSVNVMD
     LLRYDPLCPE VELISLEPDP PDPSSIFTAL ISTSTPQPAD TPSTSQVPTP STAESTHTSR
     ADADVKELMR FTTDLEPVIC DLIREYSDVF PPYFSYSGIP PMRGVEHSIQ LVPDYRVHHQ
     APYRLSIPEA TELKRQLEEL LRLGFIKPSN SPWGAPVLFA RKADETLRLC IDYHGLNRYT
     VKNSYPMPRA DELFDRLTDN RFFTKIDLRS GYHQIRIAAE DQPKTAFRSR FGHYEFTVMP
     FGLTNAPATF QTTMNDIFRD ILEEYVLVYL YDILVYSRTL EDHIRHLRDV LQCLRKHGFY
     AKLSKCCFAQ RKVDFLGHHV SDQGLHMDDA KINAIAEWAV PTSAKQLRSF LGLTSYYSNF
     IQGYARYSYV LTSTLLRKNP PWFWTPLCED AFRALKKAMT CAPVLRLPDF DHPFIVTTDA
     SDFAVGTVLS QVFPSPPDSP YPHVPPSPPP LADTASRLTP ILPPLPSTDS PPITYSPTIA
     EDGTVEARAG DCLIAFYSRQ LLPAEINYTA DEREVLAVVY ATRHWRHYLH GAPFTVRTDN
     SVVQAFLTKP KLSPRQARWW RDLSEFSFTT QPIKGETNRV ADALSRRPYH NQEPIHLAVI
     SITSVDQSVI DAYRTQYCHC PDYRVIHTTL RSGKTVPSYS LGENGLVYWH GRSGQLEPRI
     CVPSTGQLRI QAVAEFHNQA AAGHMGFHKT LARVCRLYVW PKSKDFVKAY IQECPTCQEV
     NSANHLPYGL LQPLPILEGR WQSISMDFIG PLRPPTQRGH DAXLVVVDRF TKXARFVPCR
     YRISAREVAD IVFDRVVRDH GLPQSIISDR DPRFTNTFWR RLHEVYGSQL CFSSSYHPQT
     DGQTEVTNKT LGNILRKFVR DDQQWDLHLA HAEIAYNHAV SPATGMSPFY CDLDYHPRVP
     ADFLRPLRLR PDTRCPALDD WIAHMAAIMK XAHESLXXSQ TRMAARANRS RMDHPFKVGD
     DVLVDARHLQ LEADMLRKFR RRFFGPCRIL QAVGSNTAAS PVSFRVKLPD YLXQARVHDV
     YHVSLLRPYR RPSERFAGRP YERPPLIMVD GHEEFVLSDI VSRRVTDDTP PRIEYLVRWK
     GYPDEEATWE PLEHLQHTRM LVRAYDRARR AGTSASTQPT DPLPPPPAEE IAEDEPAPSE
     AVPQPQMVAS ERPQRTHRRP SCYDD
//
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