ID A0A392LXB1_9FABA Unreviewed; 473 AA.
AC A0A392LXB1;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE RecName: Full=Gypsy retrotransposon integrase-like protein 1 {ECO:0000256|ARBA:ARBA00039658};
DE Flags: Fragment;
GN ORFNames=A2U01_0000349 {ECO:0000313|EMBL:MCH79597.1};
OS Trifolium medium.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=97028 {ECO:0000313|EMBL:MCH79597.1, ECO:0000313|Proteomes:UP000265520};
RN [1] {ECO:0000313|EMBL:MCH79597.1, ECO:0000313|Proteomes:UP000265520}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 10/8 {ECO:0000313|Proteomes:UP000265520};
RC TISSUE=Leaf {ECO:0000313|EMBL:MCH79597.1};
RX PubMed=29922311; DOI=10.3389/fpls.2018.00724;
RA Dluhosova J., Istvanek J., Nedelnik J., Repkova J.;
RT "Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture
RT of Genomic Similarities and Differences.";
RL Front. Plant Sci. 9:724-724(2018).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:MCH79597.1}.
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DR EMBL; LXQA010000212; MCH79597.1; -; Genomic_DNA.
DR Proteomes; UP000265520; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09279; RNase_HI_like; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR47266; ENDONUCLEASE-RELATED; 1.
DR PANTHER; PTHR47266:SF28; GYPSY RETROTRANSPOSON INTEGRASE-LIKE PROTEIN 1; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50879; RNASE_H_1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000265520}.
FT DOMAIN 10..139
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|PROSITE:PS50879"
FT DOMAIN 302..463
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT NON_TER 473
FT /evidence="ECO:0000313|EMBL:MCH79597.1"
SQ SEQUENCE 473 AA; 53274 MW; 749299E46141C66D CRC64;
MTPSTIPNSE ANKWTIFVDG ASNSTGAGAG IILENGAGTI IEVSLALSFP ASNNQAEYEA
FLAGLRLAKD VGTREVKIFT DSQLVVSQVI GEYQAKNDHL QEYLRLVKEM LALFDHIEVK
HVPRGDNTRA DILSKLASTK KKGGNKSVIQ EILPRPSIEE RTSSTPSVLV IDVNSIKDGT
SWMTNYYMYL AHGHLPENEK EANVVQRKAS SYCLMHDQLY KRGISSPLLR CIDEDDVDYI
SREIHEGING QHLGGRSLAR KALRAGYYWP TMQQDAREHV KKCDKYQRHA DMILAPPKEL
QTLSSPWPFS WWGMDILGPF TNGLHQCKFL IVGVDYFTKW VEAEAIPNIS AETILRFFKK
NILARFGIPQ VVVTDNGTQF TNKYFQEFLA AIKTKQXFTS VEHPQTNGQA ESANRVILRG
LKRRLAEGKN KWVEELWSVL WAYRTTPHST TGETPFRLTY GTEAVIPVEV EEL
//
