ID A0A392M0N9_9FABA Unreviewed; 1012 AA.
AC A0A392M0N9;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE SubName: Full=Ribonuclease H protein {ECO:0000313|EMBL:MCH80548.1};
GN ORFNames=A2U01_0001318 {ECO:0000313|EMBL:MCH80548.1};
OS Trifolium medium.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=97028 {ECO:0000313|EMBL:MCH80548.1, ECO:0000313|Proteomes:UP000265520};
RN [1] {ECO:0000313|EMBL:MCH80548.1, ECO:0000313|Proteomes:UP000265520}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 10/8 {ECO:0000313|Proteomes:UP000265520};
RC TISSUE=Leaf {ECO:0000313|EMBL:MCH80548.1};
RX PubMed=29922311; DOI=10.3389/fpls.2018.00724;
RA Dluhosova J., Istvanek J., Nedelnik J., Repkova J.;
RT "Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture
RT of Genomic Similarities and Differences.";
RL Front. Plant Sci. 9:724-724(2018).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:MCH80548.1}.
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DR EMBL; LXQA010001179; MCH80548.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A392M0N9; -.
DR Proteomes; UP000265520; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR CDD; cd01650; RT_nLTR_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR46890; NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED; 1.
DR PANTHER; PTHR46890:SF45; RNA BINDING _ RNA-DIRECTED DNA POLYMERASE; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000265520}.
FT DOMAIN 116..395
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
SQ SEQUENCE 1012 AA; 114135 MW; 75AC56904044F4CB CRC64;
MAKIKSSTKV ITTLQDGDNV LTDQNQISNH IVSYYKNLFC SNGVLQESLL AEQVIPNLVT
DDVNAILTML PSHEEIKAAV FSLNKDSAPG PDGFGAFFYQ EYWDIVKKDV INAVLQFFVS
SWILPGYNSN IIALIPKTPD ALSIDQFRPI AMANFKFKII SKILADRLAA IMPSIVSEEQ
KGFIHGRNIR DCLCIASEAA NLLHNKAFGG NLILKIDITK AFDTLDWNFL LKVLKTFGFN
DIFCNWISVI LHSAHLSVSI NGQSHGYFTC SRGVRQGDPL SPLLFCLAED VLSRSISYLV
SQGSFSLIKG TRNYKIPSHS FYADDLLLFC KGHISGLKAI KDLFDKYALE SGQVISNSKS
TIYSGSISNG RLNSIVNLLN FNLGSLPFFY LGVPIFKGKP KSCHLQPVAD RIKLKLSAWK
ASLLSIAGRV QLVRSVIQSM LIYSISLYSW PVTLLKDIEK CIRNFIWSGD IVKRKLVTIS
WKKICRPYSQ GGLNLRSLTT LNSSTNLSLC WSLLHSQASW ALLLKDRVLR GNRIINHHIY
SSIWCGIKDE FSVIMDNSIW LLGDGNDINF WNDNWSGIRL CELLNIPEHI RPFLSSKVSD
FIVNGRWTIP PLLQQVYPNL LSIISPVLIP FELSQDLLLW KHTDNGDLQQ KEAYMFKMQQ
FQDLDWAKYI WCQDIPPSKS LFVWRLMHGK VPTDDNLMLR GCNIPSMCNF CNNHVESSFH
IFFQCDFAVK LWSWLAGCLN VVIQFTSLGD MWKRCDLNWS PQSRVTIIAA IINLINTIWL
ARNQARFNNN FISWRSAIDM IISNTALSGN NTSKLSSNSI RDFTLLKIFR ISIHPPKTLS
LKEIIWQPPP LNWIKCNVDG ASNLSGLAAC GGVFRDHNGD FSFAYAEPLG RESAYFAELC
GAIMAIEFAF AKGWFNLWLE SDSSLVISAF KNPTRPVAWS LRNRWKNVLF MLSQMNCIVT
HIFREGNVAA DLISKHGLSS LSSVIWNTPP LFINDCLSCN KLGMPSFRIC SS
//
