ID A0A392MAY3_9FABA Unreviewed; 562 AA.
AC A0A392MAY3;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 13.
DE SubName: Full=RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313|EMBL:MCH83384.1};
DE Flags: Fragment;
GN ORFNames=A2U01_0004203 {ECO:0000313|EMBL:MCH83384.1};
OS Trifolium medium.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium.
OX NCBI_TaxID=97028 {ECO:0000313|EMBL:MCH83384.1, ECO:0000313|Proteomes:UP000265520};
RN [1] {ECO:0000313|EMBL:MCH83384.1, ECO:0000313|Proteomes:UP000265520}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 10/8 {ECO:0000313|Proteomes:UP000265520};
RC TISSUE=Leaf {ECO:0000313|EMBL:MCH83384.1};
RX PubMed=29922311; DOI=10.3389/fpls.2018.00724;
RA Dluhosova J., Istvanek J., Nedelnik J., Repkova J.;
RT "Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture
RT of Genomic Similarities and Differences.";
RL Front. Plant Sci. 9:724-724(2018).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:MCH83384.1}.
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DR EMBL; LXQA010005095; MCH83384.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A392MAY3; -.
DR Proteomes; UP000265520; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR33116:SF77; REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR33116; REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Nucleotidyltransferase {ECO:0000313|EMBL:MCH83384.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000265520};
KW RNA-directed DNA polymerase {ECO:0000313|EMBL:MCH83384.1};
KW Transferase {ECO:0000313|EMBL:MCH83384.1}.
FT DOMAIN 275..362
FT /note="Reverse transcriptase zinc-binding"
FT /evidence="ECO:0000259|Pfam:PF13966"
FT DOMAIN 473..557
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
FT NON_TER 562
FT /evidence="ECO:0000313|EMBL:MCH83384.1"
SQ SEQUENCE 562 AA; 64789 MW; 5BD47B3447D532E9 CRC64;
MGVRQVLGTG NYLGLPSMIG RKKRDVFAFI KDRLWKRINS WRGRALSRAG KEVMIKSVLQ
AIPSYVMSIY LLPDATINEI ERMLNSFWWG GRASNQGIRW LAWDHMTIPK AFGGMGFRDL
RAFNLAMIAK QAWNFMTKPH SLVARLYKAR YFPNSSLFDS HIGHNPSYAW RGIWKSRHIL
MNGCRWIIGS GTNINVMKDP WLREKDGAWI QSPQVQGAYN ITVNNLMLPN IKRWDKEKVE
TLFTDEVAKS ILDIPLFDTV EEDKLIWIDN IHGQYSVKSG YNLMMNNTGK LHNTVQQENW
KHIWKIHAPP KAKHLLWRIC KQCLPTRVRL HERCVPCTLL CPLCDLCNED DWHILFSCTV
SMQARQAADL ELSILNCMQQ MSSAKDIILS ICEGEDADTA GRFAMLLWVL WNNRNNKVWN
DSQETGRNLG HQSRHLWMDW FSMQSFQQGS TPNMQQQHVL TWQKPPTGWF KCNSDAGFHN
DLNKTSDGWC LRDHSGNFVQ AGTNWREGQC SIVEGESLAL LEAMKAMEHR RLTHVIFETD
SKSVIDAIHN LHVGSSEFSA TI
//
