ID A0A397KUG1_BRACM Unreviewed; 841 AA.
AC A0A397KUG1;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS50016};
DE Flags: Fragment;
GN ORFNames=BRARA_K01843 {ECO:0000313|EMBL:RIA03966.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RIA03966.1};
RN [1] {ECO:0000313|EMBL:RIA03966.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; KZ868810; RIA03966.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A397KUG1; -.
DR Proteomes; UP000264353; Unassembled WGS sequence.
DR GO; GO:0000785; C:chromatin; IEA:UniProt.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd15519; PHD1_Lid2p_like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR028942; WHIM1_dom.
DR InterPro; IPR028941; WHIM2_dom.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR47162; OS02G0192300 PROTEIN; 1.
DR PANTHER; PTHR47162:SF5; PHD-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00628; PHD; 1.
DR Pfam; PF15612; WHIM1; 1.
DR Pfam; PF15613; WSD; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Bromodomain {ECO:0000256|ARBA:ARBA00023117};
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 82..132
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 254..275
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 376..403
FT /evidence="ECO:0000256|SAM:Coils"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:RIA03966.1"
FT NON_TER 841
FT /evidence="ECO:0000313|EMBL:RIA03966.1"
SQ SEQUENCE 841 AA; 94132 MW; BC887D81A085D773 CRC64;
FSLSDLQLWS CIRVMYADQP DSLELVEKLS KKFKSLYEAE VLPLAQKLMD YRKLECLSAE
MRKEIKDIVV SVNKLPKAPW DEGVCKICGV DKDDDSVLLC DTCDAEYHTY CLNPPLIRIP
DGNWYCPSCV IAKRMAQDAL ESYKLVRQRK GRKYQGELTR AYMEQTAHLA DVMKEKDYWE
FSAEERIQLL KFLCDELLSS SLVHQHLEQC AEAIIEMQQK LRSLSSEWKN TKMRQEFLRA
KLAKVEPSII KAMGEPQNSS SFADHNGDRV THDDDSSRAA FLNNNQGKAL LETDAQTGVS
NVISCASNIS SPEKATSPGR HELPIEVTDN MSCEEEDTTE TLQTSVGRND ETQCLKPDAV
ELQTANDASS VAFQELQACQ RDLNAASNEI ENVQQSIRSI EAQLLRQSIR REFLGSDASG
RLYWGCSFPE EHPRILVDGC MSLQKPVQVD PTGSKVSSPF LRDIDHGRLM VSPWTCYETE
AEISELVLWL HDDDLKERDL RESILCWKRL RFGNLHTEIK QAQNSSSPKL AGNLVTKAAM
SMEKRYGPCI KLETETIKKR GKKTKVAELE KLCKCECLES ILPSMIHCLI CHKTFASDDE
FEEHAESKCV PYSLATEEGK EKSDSSKAKE SLKSDYLSVK SSAGKDKAEI SNVSELGSGL
IRYQEEESIS PYHFEEICSK FVTKDSNRDL VKEIGLIGSN GSPTFLPLPS IHLNDSMLIS
ATCNKLDGGD SGDQVIFTGS EANGEGLNSE SLDRSVTNDL GNPLNKLSGM GCDKSEEKNK
KSTGSGLKGC CVVPQASLKR VTGKALPVFR FLKTNLLDMD VALPEEALRP SKSHPDRRRA
W
//
