ID A0A397NLZ8_9SPHN Unreviewed; 672 AA.
AC A0A397NLZ8;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 24-JAN-2024, entry version 18.
DE SubName: Full=Type IV secretion system protein VirD4 {ECO:0000313|EMBL:RIA37408.1};
GN ORFNames=DFR49_3292 {ECO:0000313|EMBL:RIA37408.1};
OS Hephaestia caeni.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Hephaestia.
OX NCBI_TaxID=645617 {ECO:0000313|EMBL:RIA37408.1, ECO:0000313|Proteomes:UP000266568};
RN [1] {ECO:0000313|EMBL:RIA37408.1, ECO:0000313|Proteomes:UP000266568}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 25527 {ECO:0000313|EMBL:RIA37408.1,
RC ECO:0000313|Proteomes:UP000266568};
RA Goeker M.;
RT "Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing the
RT most valuable type-strain genomes for metagenomic binning, comparative
RT biology and taxonomic classification.";
RL Submitted (AUG-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
CC -!- SIMILARITY: Belongs to the VirD4/TraG family.
CC {ECO:0000256|ARBA:ARBA00008806}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RIA37408.1}.
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DR EMBL; QXDC01000004; RIA37408.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A397NLZ8; -.
DR OrthoDB; 9759295at2; -.
DR Proteomes; UP000266568; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR CDD; cd01127; TrwB_TraG_TraD_VirD4; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003688; TraG/VirD4.
DR PANTHER; PTHR37937; CONJUGATIVE TRANSFER: DNA TRANSPORT; 1.
DR PANTHER; PTHR37937:SF1; CONJUGATIVE TRANSFER: DNA TRANSPORT; 1.
DR Pfam; PF02534; T4SS-DNA_transf; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000266568};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 43..64
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 76..96
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT REGION 554..645
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 598..613
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 672 AA; 73904 MW; EB9F843598B4502D CRC64;
MSATKILWGQ ILVVFAIVLA SVWSATQWTA VALGHQPQLG PPWFTAFDVP IYPPLAFFWW
WFSFDAYAPD IFQRGAYIAV SGGFLSIIVA IGMSVWRARE IRNAETFGTA RWATVKEIRG
AGLLGDDGVV LGRFAREYLR HDGPEHVLCF APTRSGKGVG LVVPSLLTWP GSAIVHDIKG
ENWGLTAGFR ARFGKVLLFD PTNAASAAYN PLLEVRRGEW EVRDVQNVAD VLVDPEGSLE
KRNHWEKTSH ALLVGTILHV LYAEPDKTLA GVANFLSDPK RPMETTLKAM MLTPHLGEAG
VHPVVASAAR ELLNKSENER SGVLSTAMSF LGLYRDPVVA AVTRQCDWRI ADLVDGAHPV
SLYLVVPPSD ISRTKPLIRL ILNQIGRRLT EDLKAKDGRH RMLLMLDEFP ALGRLDFFES
ALAFMAGYGM KAFLIAQSLN QIEKAYGPNN AILDNCHVRV SFATNDERTA KRVSDALGTA
TEMRAMKNYA GHRLSPWLGH LMVSRSETAR QLMTPGEIMQ LPPDDEIVMI AGLPPVRAKK
ARYFTDRRFT ARLLPAPKTQ RSTTAPRPDD WTALAAPPRP VLADPASADG SSRNPGKPAK
PTAASQSDTA NANIRREPGL PDHEEVVRES PAPTPEFAFD DTEATDNDAA IQRRMQRLAR
QASLDPGDGI QL
//