ID A0A397S7Q8_9GLOM Unreviewed; 978 AA.
AC A0A397S7Q8;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE RecName: Full=116 kDa U5 small nuclear ribonucleoprotein component {ECO:0000256|ARBA:ARBA00018774};
DE AltName: Full=U5 snRNP-specific protein, 116 kDa {ECO:0000256|ARBA:ARBA00031432};
GN ORFNames=C1645_836872 {ECO:0000313|EMBL:RIA81512.1};
OS Glomus cerebriforme.
OC Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina;
OC Glomeromycetes; Glomerales; Glomeraceae; Glomus.
OX NCBI_TaxID=658196 {ECO:0000313|EMBL:RIA81512.1, ECO:0000313|Proteomes:UP000265703};
RN [1] {ECO:0000313|EMBL:RIA81512.1, ECO:0000313|Proteomes:UP000265703}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DAOM 227022 {ECO:0000313|EMBL:RIA81512.1,
RC ECO:0000313|Proteomes:UP000265703};
RA Morin E., San Clemente H., Chen E.C.H., De La Providencia I., Hainaut M.,
RA Kuo A., Kohler A., Murat C., Tang N., Roy S., Loubradou J., Henrissat B.,
RA Grigoriev I.V., Corradi N., Roux C., Martin F.M.;
RT "Comparative genomics reveals the genomic features of Rhizophagus
RT irregularis, R. cerebriforme, R. diaphanum and Gigaspora rosea, and their
RT symbiotic lifestyle signature.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RIA81512.1}.
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DR EMBL; QKYT01000784; RIA81512.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A397S7Q8; -.
DR STRING; 658196.A0A397S7Q8; -.
DR Proteomes; UP000265703; Unassembled WGS sequence.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd04098; eEF2_C_snRNP; 1.
DR CDD; cd04090; EF2_II_snRNP; 1.
DR CDD; cd01683; EF2_IV_snRNP; 1.
DR CDD; cd16264; snRNP_III; 1.
DR CDD; cd04167; Snu114p; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR Gene3D; 3.30.70.240; -; 1.
DR Gene3D; 3.30.70.870; Elongation Factor G (Translational Gtpase), domain 3; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 2.40.30.10; Translation factors; 1.
DR Gene3D; 3.90.1430.10; Yeast translation eEF2 (G' domain); 1.
DR InterPro; IPR041095; EFG_II.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR000640; EFG_V-like.
DR InterPro; IPR004161; EFTu-like_2.
DR InterPro; IPR031950; EFTUD2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR044121; Snu114_GTP-bd.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR005517; Transl_elong_EFG/EF2_IV.
DR InterPro; IPR035655; U5-116kDa_C.
DR NCBIfam; TIGR00231; small_GTP; 1.
DR PANTHER; PTHR42908:SF6; 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT; 1.
DR PANTHER; PTHR42908; TRANSLATION ELONGATION FACTOR-RELATED; 1.
DR Pfam; PF00679; EFG_C; 1.
DR Pfam; PF14492; EFG_III; 1.
DR Pfam; PF03764; EFG_IV; 1.
DR Pfam; PF16004; EFTUD2; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF03144; GTP_EFTU_D2; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SMART; SM00838; EFG_C; 1.
DR SMART; SM00889; EFG_IV; 1.
DR SUPFAM; SSF54980; EF-G C-terminal domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR SUPFAM; SSF50447; Translation proteins; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 4: Predicted;
KW GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW Hydrolase {ECO:0000313|EMBL:RIA81512.1};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000265703};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT DOMAIN 134..342
FT /note="Tr-type G"
FT /evidence="ECO:0000259|PROSITE:PS51722"
FT REGION 1..47
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 17..44
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 978 AA; 110625 MW; BE36329A4B1BEC11 CRC64;
MEESLYDEFG NYLGPELPES EEEEEEETLQ PMQEDIEEEY EGEAEAGGSS MALMEIDDVP
QTQVVLHEDK KYYPSAEEVY GPEVETLVQE EDTQPLSEPI IQPIKIKKFQ IQEKDLPETR
YKKEFLVDMM NFPELIRNIA IVGHLHHGKT SFVDMLVNET HSSVAWDVDR QERYTDTHTL
ERDRGVSIKS MPMTIILQDS KGKSYLFSIL DTPGHVDFVD EVTAALRLAD GAVVVVDSIE
GVMANTERVI KHIIQEKLAF TLVVNKVDRL ILELKLPPSD AYYKLRHTIE EVNTIISQCA
PGQDLRVSPE RGNVCFASSQ MGWCFTLKSF AKLYTDNYGD LSVDDFSKRL WGDIYFNPTE
RTFSRKSLES KSQRSFVHFI LDPLYKLYAQ VIGENEDTLK RTLASLGIFL KASHFQLDVK
PLLRIVLDQF FGPSTGFVDM VVHHIPSPEN NAINKVEHTY TGPMHTNVAK SMLKCDSDGP
LMIYVTKLYN SADASTFDAF GRILSGTVRK GQSVRVLGEG YSIEDEEDMT LQEVTDVWIF
ESRYRIEVEG IPAGNWVLLG GVDNSIVKTA TITNKDTEED MYIFRPLSFV TTAVLKVAVE
PVNPSELPKM LDGLRKINKS YPILITKVEE SGEHIILGTG ELYLDCVLHD LRRMYAEIEL
KVSDPVVRFC ETVVETSALK CFAETPNKKN KLTMISEPLE KGIAEDIEAG KVSIKWPAKD
ITKFFEENHS WDLLAARSIW AFGPDENGPN ILMDDTLPTE VDKKLLSSVR DSIRQGFQWG
TREGPLCDEP IRNVKFRILD AVLAPEPIYR GGGQIIPTAR RVCYSAFLTA TPRLMEPVYY
VEIQAPADCV TAVYTVLARR RGHVTQDIPK AGSPLYTVKA YIPVIEANGF ETDLRTHTQG
QAFCQQMFDH WQIIPGDPLD KSIVLRPLEP SPAQHLARDF MVKTRRRKGL SEDVSVNKFF
DDPLLLAMAK SDILPNIL
//
