ID A0A397XXM8_BRACM Unreviewed; 353 AA.
AC A0A397XXM8; M4EGZ0;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE RecName: Full=5'-3' exonuclease domain-containing protein {ECO:0000259|SMART:SM00475};
GN ORFNames=BRAA09T38748Z {ECO:0000313|EMBL:VDC61137.1},
GN BRAPAZ1V2_A09P42930.2 {ECO:0000313|EMBL:CAG7863826.1}, BRARA_I02421
GN {ECO:0000313|EMBL:RID45717.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RID45717.1, ECO:0000313|Proteomes:UP000264353};
RN [1] {ECO:0000313|EMBL:RID45717.1, ECO:0000313|Proteomes:UP000264353}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:CAG7863826.1, ECO:0000313|Proteomes:UP000694005}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RG Genoscope - CEA;
RA William W.;
RL Submitted (JUL-2021) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:Bra028055.1-P}
RP IDENTIFICATION.
RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra028055.1-P};
RG EnsemblPlants;
RL Submitted (MAR-2023) to UniProtKB.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; LS974625; CAG7863826.1; -; Genomic_DNA.
DR EMBL; CM010636; RID45717.1; -; Genomic_DNA.
DR EMBL; LR031568; VDC61137.1; -; Genomic_DNA.
DR RefSeq; XP_009114735.1; XM_009116487.2.
DR STRING; 51351.M4EGZ0; -.
DR EnsemblPlants; Bra028055.1; Bra028055.1-P; Bra028055.
DR GeneID; 103840006; -.
DR Gramene; Bra028055.1; Bra028055.1-P; Bra028055.
DR KEGG; brp:103840006; -.
DR eggNOG; ENOG502QPWK; Eukaryota.
DR HOGENOM; CLU_064190_0_0_1; -.
DR OMA; YKAHRPR; -.
DR OrthoDB; 394414at2759; -.
DR Proteomes; UP000011750; Unassembled WGS sequence.
DR Proteomes; UP000264353; Chromosome a9.
DR Proteomes; UP000694005; Chromosome A09.
DR GO; GO:0017108; F:5'-flap endonuclease activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0033567; P:DNA replication, Okazaki fragment processing; IEA:InterPro.
DR CDD; cd09859; PIN_53EXO; 1.
DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR Gene3D; 3.40.50.1010; 5'-nuclease; 1.
DR InterPro; IPR020046; 5-3_exonucl_a-hlix_arch_N.
DR InterPro; IPR002421; 5-3_exonuclease.
DR InterPro; IPR036279; 5-3_exonuclease_C_sf.
DR InterPro; IPR020045; DNA_polI_H3TH.
DR InterPro; IPR038969; FEN.
DR InterPro; IPR029060; PIN-like_dom_sf.
DR PANTHER; PTHR42646:SF4; 5'-3' EXONUCLEASE FAMILY PROTEIN; 1.
DR PANTHER; PTHR42646; FLAP ENDONUCLEASE XNI; 1.
DR Pfam; PF01367; 5_3_exonuc; 1.
DR Pfam; PF02739; 5_3_exonuc_N; 1.
DR SMART; SM00475; 53EXOc; 1.
DR SUPFAM; SSF47807; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR SUPFAM; SSF88723; PIN domain-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000011750}.
FT DOMAIN 79..335
FT /note="5'-3' exonuclease"
FT /evidence="ECO:0000259|SMART:SM00475"
FT REGION 41..73
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 353 AA; 39888 MW; E55D81A523DBEEF3 CRC64;
MMTTVGFAQS NSFLLFLRSQ SIEKTKSSRA KWVTSSSSSS SHLRASSVSH SSTEAFHRTD
RGQAVANDGM NEESRKKKKR VFFLDVSPLC YEGNKPSSQA FGHWLSLFFS QVSLTDPVIA
VLDGEEGNKL RRELLPSYKA HRKSPNPGKY SKRPHQFVEE VLRKCNVPVV RIQGHEADDV
VATLMEQAVQ RGHRAVIASP DKDFKQLISE NVQIVIPLAD LRRWSFYTLK HYHAQYNCDP
QSDLSFRCIM GDEVDGVPGI QHVVPAFGRK TAMKLVRKHG SLENLLSAAA VRTVGRPYAQ
EALTKYADYL RRNYQVLALK RDVKVQIEEE WLVERDTSND SEVLSSFFST LHG
//
