ID A0A397YCB0_BRACM Unreviewed; 1058 AA.
AC A0A397YCB0;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 28-JUN-2023, entry version 20.
DE RecName: Full=TIR domain-containing protein {ECO:0000259|PROSITE:PS50104};
GN ORFNames=BRARA_I04817 {ECO:0000313|EMBL:RID48296.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RID48296.1, ECO:0000313|Proteomes:UP000264353};
RN [1] {ECO:0000313|EMBL:RID48296.1, ECO:0000313|Proteomes:UP000264353}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM010636; RID48296.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A397YCB0; -.
DR Proteomes; UP000264353; Chromosome a9.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0043531; F:ADP binding; IEA:InterPro.
DR GO; GO:0006952; P:defense response; IEA:InterPro.
DR GO; GO:0007165; P:signal transduction; IEA:InterPro.
DR Gene3D; 1.10.8.430; Helical domain of apoptotic protease-activating factors; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.80.10.10; Ribonuclease Inhibitor; 3.
DR Gene3D; 3.40.50.10140; Toll/interleukin-1 receptor homology (TIR) domain; 1.
DR InterPro; IPR042197; Apaf_helical.
DR InterPro; IPR044974; Disease_R_plants.
DR InterPro; IPR011713; Leu-rich_rpt_3.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR002182; NB-ARC.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000157; TIR_dom.
DR InterPro; IPR035897; Toll_tir_struct_dom_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR11017:SF541; DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) FAMILY; 1.
DR PANTHER; PTHR11017; LEUCINE-RICH REPEAT-CONTAINING PROTEIN; 1.
DR Pfam; PF07725; LRR_3; 1.
DR Pfam; PF00931; NB-ARC; 1.
DR Pfam; PF01582; TIR; 1.
DR PRINTS; PR00364; DISEASERSIST.
DR SMART; SM00255; TIR; 1.
DR SUPFAM; SSF52058; L domain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF52200; Toll/Interleukin receptor TIR domain; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50104; TIR; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 1033..1057
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 13..177
FT /note="TIR"
FT /evidence="ECO:0000259|PROSITE:PS50104"
SQ SEQUENCE 1058 AA; 119817 MW; E045035FBD506973 CRC64;
MASSSSSSVP RVSKYDVFLS FRGEDTRKTI VSHLYAALDS RGIVTFKDDQ RLEKGDHISD
QLHIALKGSS FAVVVLSENY ATSRWCLMEL QLIMEHMKEG TLEVFPVFYG VDPSTVRHQL
GSFSLERYKG RPEMVHKVHK WREALHLIAN LSGLDSRHCV DEAVMVGEIA RDISRRVTLM
QKIDSGNIVG MKAHMEGLNH LLDLESNEVV VLGIWGMGGI GKTSIAKCLY DQISPRFRAR
CFIENIKSVS KEHDHDLKHF QKEMLCSILS DDISLWSVEA GCQEIKKRLG HQKVFLVLDG
VDKVAQVHAL AKEKNWFGPG SRIIITTRDM GLLNTCGVEK VYEVNCLNDK DALKMFKQIA
FEGGGGSPCD GFEQLSIRAT RLSHGLPSAI QAHALFLRGR TAAPEVWEEA LTALESSLDE
NTMEILKISY EGLPKPHQNV FLHVACLFNG DTLQRINSLL HGPIPQSSLW IRVLAEKSLI
KISTNGSVIM HKLVEQMARE MIRDDTSLAR KFLRDPQDIC YALTNFRDGG EQTECMSLHS
CNLACAFSMK ASVVGHMHNL KFLKVYKHVD SRESKLQLIP DQHLLPPSLR LFHWDAFPLR
TLPSDTDPYF LVELNLRHSD LETLWSGTPM LESLKRLDVT GSKHLKQLPD LSRITSLDEL
ALEHCTRLKG IPESIGKRST LKKLKLSYYG GLRSALKFFI RKPTMQQHIG LEFPDAKVKM
DALINISIGG DISFEFCSKF RGTAEYVSFN SDQQIPVTSS MNLQQSPWLI SECNRFNSLS
IMRFSHKENG ESFSFDSFPD FPDLKELKLV NLNIRKIPSG VHGIHKLEFI EKLDLSGNDF
ENLPEAMVSL TRLKTLWLRN CFKLKELPKL TQVQTLTLTN CRNLRSLVKL SETSEEQGRY
CLLELCLENC NNVEFLSDQL IYFIKLTNLD LSGHEFVALP SSIRDLTSLV TLCLNNCKNL
RSVEKLPLSL QFLDAHGCDS LEEADSVEHF RDKPNEEVQQ RTFFKETDMP FYVLNHQATR
ICHIIHLLKN TTALMFIGIP ICITLVAVLV ASLLRVFK
//