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Database: UniProt
Entry: A0A397YCB0_BRACM
LinkDB: A0A397YCB0_BRACM
Original site: A0A397YCB0_BRACM 
ID   A0A397YCB0_BRACM        Unreviewed;      1058 AA.
AC   A0A397YCB0;
DT   05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT   05-DEC-2018, sequence version 1.
DT   28-JUN-2023, entry version 20.
DE   RecName: Full=TIR domain-containing protein {ECO:0000259|PROSITE:PS50104};
GN   ORFNames=BRARA_I04817 {ECO:0000313|EMBL:RID48296.1};
OS   Brassica campestris (Field mustard).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX   NCBI_TaxID=3711 {ECO:0000313|EMBL:RID48296.1, ECO:0000313|Proteomes:UP000264353};
RN   [1] {ECO:0000313|EMBL:RID48296.1, ECO:0000313|Proteomes:UP000264353}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA   Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA   Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA   Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA   Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA   Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA   Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA   Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA   Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA   Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA   Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA   Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA   Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA   Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA   Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA   Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA   Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA   Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA   Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA   Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA   Yotsui I., Zachgo S., Schmutz J.;
RT   "WGS assembly of Brassica rapa FPsc.";
RL   Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CM010636; RID48296.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A397YCB0; -.
DR   Proteomes; UP000264353; Chromosome a9.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0043531; F:ADP binding; IEA:InterPro.
DR   GO; GO:0006952; P:defense response; IEA:InterPro.
DR   GO; GO:0007165; P:signal transduction; IEA:InterPro.
DR   Gene3D; 1.10.8.430; Helical domain of apoptotic protease-activating factors; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.80.10.10; Ribonuclease Inhibitor; 3.
DR   Gene3D; 3.40.50.10140; Toll/interleukin-1 receptor homology (TIR) domain; 1.
DR   InterPro; IPR042197; Apaf_helical.
DR   InterPro; IPR044974; Disease_R_plants.
DR   InterPro; IPR011713; Leu-rich_rpt_3.
DR   InterPro; IPR032675; LRR_dom_sf.
DR   InterPro; IPR002182; NB-ARC.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000157; TIR_dom.
DR   InterPro; IPR035897; Toll_tir_struct_dom_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   PANTHER; PTHR11017:SF541; DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) FAMILY; 1.
DR   PANTHER; PTHR11017; LEUCINE-RICH REPEAT-CONTAINING PROTEIN; 1.
DR   Pfam; PF07725; LRR_3; 1.
DR   Pfam; PF00931; NB-ARC; 1.
DR   Pfam; PF01582; TIR; 1.
DR   PRINTS; PR00364; DISEASERSIST.
DR   SMART; SM00255; TIR; 1.
DR   SUPFAM; SSF52058; L domain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   SUPFAM; SSF52200; Toll/Interleukin receptor TIR domain; 1.
DR   SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR   PROSITE; PS50104; TIR; 1.
PE   4: Predicted;
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        1033..1057
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          13..177
FT                   /note="TIR"
FT                   /evidence="ECO:0000259|PROSITE:PS50104"
SQ   SEQUENCE   1058 AA;  119817 MW;  E045035FBD506973 CRC64;
     MASSSSSSVP RVSKYDVFLS FRGEDTRKTI VSHLYAALDS RGIVTFKDDQ RLEKGDHISD
     QLHIALKGSS FAVVVLSENY ATSRWCLMEL QLIMEHMKEG TLEVFPVFYG VDPSTVRHQL
     GSFSLERYKG RPEMVHKVHK WREALHLIAN LSGLDSRHCV DEAVMVGEIA RDISRRVTLM
     QKIDSGNIVG MKAHMEGLNH LLDLESNEVV VLGIWGMGGI GKTSIAKCLY DQISPRFRAR
     CFIENIKSVS KEHDHDLKHF QKEMLCSILS DDISLWSVEA GCQEIKKRLG HQKVFLVLDG
     VDKVAQVHAL AKEKNWFGPG SRIIITTRDM GLLNTCGVEK VYEVNCLNDK DALKMFKQIA
     FEGGGGSPCD GFEQLSIRAT RLSHGLPSAI QAHALFLRGR TAAPEVWEEA LTALESSLDE
     NTMEILKISY EGLPKPHQNV FLHVACLFNG DTLQRINSLL HGPIPQSSLW IRVLAEKSLI
     KISTNGSVIM HKLVEQMARE MIRDDTSLAR KFLRDPQDIC YALTNFRDGG EQTECMSLHS
     CNLACAFSMK ASVVGHMHNL KFLKVYKHVD SRESKLQLIP DQHLLPPSLR LFHWDAFPLR
     TLPSDTDPYF LVELNLRHSD LETLWSGTPM LESLKRLDVT GSKHLKQLPD LSRITSLDEL
     ALEHCTRLKG IPESIGKRST LKKLKLSYYG GLRSALKFFI RKPTMQQHIG LEFPDAKVKM
     DALINISIGG DISFEFCSKF RGTAEYVSFN SDQQIPVTSS MNLQQSPWLI SECNRFNSLS
     IMRFSHKENG ESFSFDSFPD FPDLKELKLV NLNIRKIPSG VHGIHKLEFI EKLDLSGNDF
     ENLPEAMVSL TRLKTLWLRN CFKLKELPKL TQVQTLTLTN CRNLRSLVKL SETSEEQGRY
     CLLELCLENC NNVEFLSDQL IYFIKLTNLD LSGHEFVALP SSIRDLTSLV TLCLNNCKNL
     RSVEKLPLSL QFLDAHGCDS LEEADSVEHF RDKPNEEVQQ RTFFKETDMP FYVLNHQATR
     ICHIIHLLKN TTALMFIGIP ICITLVAVLV ASLLRVFK
//
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