ID A0A397YYX8_BRACM Unreviewed; 995 AA.
AC A0A397YYX8;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE RecName: Full=FYVE-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=BRARA_F01931 {ECO:0000313|EMBL:RID58647.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RID58647.1, ECO:0000313|Proteomes:UP000264353};
RN [1] {ECO:0000313|EMBL:RID58647.1, ECO:0000313|Proteomes:UP000264353}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM010633; RID58647.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A397YYX8; -.
DR Proteomes; UP000264353; Chromosome a6.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00065; FYVE_like_SF; 1.
DR CDD; cd13365; PH_PLC_plant-like; 1.
DR Gene3D; 2.30.29.30; Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB); 1.
DR Gene3D; 2.130.10.30; Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR013591; Brevis_radix_dom.
DR InterPro; IPR011993; PH-like_dom_sf.
DR InterPro; IPR001849; PH_domain.
DR InterPro; IPR009091; RCC1/BLIP-II.
DR InterPro; IPR000408; Reg_chr_condens.
DR InterPro; IPR000306; Znf_FYVE.
DR InterPro; IPR017455; Znf_FYVE-rel.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR22870:SF350; F12P19.9 PROTEIN; 1.
DR PANTHER; PTHR22870; REGULATOR OF CHROMOSOME CONDENSATION; 1.
DR Pfam; PF08381; BRX; 1.
DR Pfam; PF01363; FYVE; 1.
DR Pfam; PF16457; PH_12; 1.
DR Pfam; PF00415; RCC1; 5.
DR PRINTS; PR00633; RCCNDNSATION.
DR SMART; SM00064; FYVE; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF50729; PH domain-like; 1.
DR SUPFAM; SSF50985; RCC1/BLIP-II; 1.
DR PROSITE; PS51514; BRX; 1.
DR PROSITE; PS00626; RCC1_2; 1.
DR PROSITE; PS50012; RCC1_3; 6.
DR PROSITE; PS50178; ZF_FYVE; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00091}.
FT REPEAT 306..357
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 358..408
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 409..460
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 474..525
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 526..577
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 578..629
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT DOMAIN 634..696
FT /note="FYVE-type"
FT /evidence="ECO:0000259|PROSITE:PS50178"
FT DOMAIN 937..992
FT /note="BRX"
FT /evidence="ECO:0000259|PROSITE:PS51514"
FT REGION 720..744
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 788..836
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 995 AA; 109547 MW; 83C7121C4E2CAD0B CRC64;
MGEQHISATV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGQGE
RQLRLSSVIT IVRGQITPKF EKQAQPDRKE QSFSLVYANG EYTLDLICKD KAQADSWFKG
LRAVITKHHN ARSSVNLRTS RGAQSCINSP AGFIRRKQNL GLVEETPDFT QIRSLCASPS
TLLEERCLWL SGSSDSFYSV ESAGSDGFGP VSPYYEADCD QTGSELSKKH SSQRFYVSPP
HTVTQPTARS NVLKDVMIWG ATRGLIEGSK NQNDALSPQL LESATMFDVQ SISLGAKHAA
LVTRQGEVFC WGNGNSGKLG LKVNLDIDHP KRVESLEGIA VGSVACSDHQ TCAVTESGEL
YLWGIDGGST GESGRQFLTR KIADLFGGSL RVHSVACGAW HTAIVTFSGQ LYTYGSGTFG
VLGHGSLESV TKPKEVESLK RMKVVSVSCG PWHTAAIVET STIDRKYHNA KSCGKLFTWG
DGDKGRLGHV DSKRKLVPTC VSELIDQDFV KVSCGWTLTV ALSNRGTVYT MGSSIHGQLG
CPRAKDKSIN TVLGNLTRQF VKEIACGSHH VAVLTSFGNV YTWGKGANGQ LGLGDVRDRN
SPVLVESLGD RLVESVACGL SLTAAICLHK DISLTDQSAC SSCKSAFGFT RKKHNCYNCG
LLFCNACSSK KAVNASLAPN KGKLSRVCDS CFNHLWRITE FSNKVKMQLV TNARRVSDEW
TETESQNQIQ NIPQANSSSD GQPRWGQVSA PSLFLFDKMS LSLTSPEDIS VSSRRPSSTK
ISTSSETNKI FIDEMERLKA EVRNLQKQCE LGNEKIEECQ REFEKTSQVA KEEAEKAKVA
KEIIKAMASR LQTNKEKPNN PKTGIACNPS KVSPIFDDDS VSAPFLTPIT TTCSQSKDKQ
IVEKCSSRES NIRLLVNASP AITRTGYMQN GTQESTAEKV EQYEPGVYIT FTALPCGQKT
LKRVRFSRKR FSEKEAQRWW EEKQVLVYNK YDAEA
//
