ID A0A397YZK4_BRACM Unreviewed; 1116 AA.
AC A0A397YZK4;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE RecName: Full=RING-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=BRARA_F00669 {ECO:0000313|EMBL:RID57284.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RID57284.1, ECO:0000313|Proteomes:UP000264353};
RN [1] {ECO:0000313|EMBL:RID57284.1, ECO:0000313|Proteomes:UP000264353}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the NFX1 family.
CC {ECO:0000256|ARBA:ARBA00007269}.
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DR EMBL; CM010633; RID57284.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A397YZK4; -.
DR Proteomes; UP000264353; Chromosome a6.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd06008; NF-X1-zinc-finger; 7.
DR CDD; cd16492; RING-CH-C4HC3_NFX1-like; 1.
DR InterPro; IPR034078; NFX1_fam.
DR InterPro; IPR000967; Znf_NFX1.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR001841; Znf_RING.
DR PANTHER; PTHR12360; NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1; 1.
DR PANTHER; PTHR12360:SF12; TRANSCRIPTIONAL REPRESSOR NF-X1; 1.
DR Pfam; PF01422; zf-NF-X1; 9.
DR SMART; SM00438; ZnF_NFX; 8.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 148..209
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 151..207
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 60..118
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1072..1116
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 15..43
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 65..110
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1072..1098
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1116 AA; 121546 MW; E2712F12C8CB01AE CRC64;
MSSQVRRDRR HQSSQQTWVP RGASTSVAVV NEPSHPPANN TAGVSESLAA GAASRPVYLG
RQHNGSVRPS YNQHQRNNNV AAPPPHNRQR RNNNAPGATL LDNRQRVGSR TRPVYQGKRV
AKEDNIALTD PNLPQLVQEI QEKLVKSSIE CMICYDKVGR AANIWSCSSC YSIFHMHCIK
KWARAPTSID LLAEKNQGDN WRCPGCQSVQ LTSSREICYR CFCGKRKDPP ADPYLTPHSC
GEPCGKPLEK ELFAGAETTS EDLCPHICVL QCHPGPCPPC KAFAPPRSCP CGKKTVHTRC
SERRSLLVCG QRCEKLLNCG RHQCEKTCHV GPCDPCQVLV NATCFCKKKV ETVICGDMNV
KGELKAEDGV YSCNLNCGKP LGCGNHFCSE VCHPGPCGDC DLLPGRVKTC YCGKTRLEEQ
TRQSCLDPIP SCSNICSKLL PCGLHTCNEV CHSGDCPPCL VQVNQKCRCG STSRTVECYI
TTSSETDKFV CSKPCGRKKN CGRHRCSERC CPLLNAKKND LSGDWDEHLC QLPCGKNLRC
GQHSCESLCH SGHCPPCLEM IFTDLTCACG NTSIPPPLPC GTPVPSCQLP CSIPQPCGHS
ATHGCHFGDC PPCSTPVEKK CVGGHVVLRN IPCGLKDIRC NKICGKTRRC GMHACARTCH
PEACDTYSES EAGLRVTCGQ TCSAPRRDCR HTCAALCHPS QPCPDSRCEF PVTITCSCGR
ITATVPCDAG GGSTSNLSVD SIYEASVLQK LPASLQPVES SANRIPLGQR KLSCDDECAK
LERKRVLQDA FDITPPNLDS LHFSENAAMT EIISDIYRRD PKWVLAVEER FKFLVLGKAR
GSTSTLKVHV FCPMQKDKRD TVRLLAERWK LAVSNAGWEP KRFTVVHVTQ KSKTPTRIIG
ARGGAISLGG PHPPSFDPLV DMDPRLVVSL LDLPREANIS ALVLRFGGEC ELVWLNDKNA
LAVFHDHARA ATAMRRLDHG SVYHGAVVVQ NGPQSPSLGG NAWGKLPSSS SWDVQKANPW
KKAVIQESDE NWGAEDSPIG GSSTDIQAAA WRSATSNTPV VTSVNRWSVL EPEKPNTSAL
QPLVQTEGSS SSKAAGKQPV EGSSEEVVDD WEKVCE
//
