ID A0A397Z6I2_BRACM Unreviewed; 253 AA.
AC A0A397Z6I2; M4CKU2;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE RecName: Full=Zinc finger PHD-type domain-containing protein {ECO:0000259|SMART:SM00249};
GN ORFNames=BRAA05T19429Z {ECO:0000313|EMBL:VDC69715.1},
GN BRAPAZ1V2_A05P04490.2 {ECO:0000313|EMBL:CAG7873928.1}, BRARA_E00423
GN {ECO:0000313|EMBL:RID61257.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RID61257.1, ECO:0000313|Proteomes:UP000264353};
RN [1] {ECO:0000313|EMBL:RID61257.1, ECO:0000313|Proteomes:UP000264353}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:VDC69715.1}
RP NUCLEOTIDE SEQUENCE.
RG Genoscope - CEA;
RA William W.;
RL Submitted (NOV-2018) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:Bra004828.1-P}
RP IDENTIFICATION.
RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra004828.1-P};
RG EnsemblPlants;
RL Submitted (MAR-2023) to UniProtKB.
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DR EMBL; LS974621; CAG7873928.1; -; Genomic_DNA.
DR EMBL; CM010632; RID61257.1; -; Genomic_DNA.
DR EMBL; LR031570; VDC69715.1; -; Genomic_DNA.
DR RefSeq; XP_009143019.1; XM_009144771.1.
DR STRING; 51351.M4CKU2; -.
DR EnsemblPlants; Bra004828.1; Bra004828.1-P; Bra004828.
DR GeneID; 103866791; -.
DR Gramene; Bra004828.1; Bra004828.1-P; Bra004828.
DR KEGG; brp:103866791; -.
DR eggNOG; ENOG502S2HY; Eukaryota.
DR HOGENOM; CLU_094388_0_0_1; -.
DR OMA; ISEDLWM; -.
DR OrthoDB; 661986at2759; -.
DR Proteomes; UP000011750; Unassembled WGS sequence.
DR Proteomes; UP000264353; Chromosome a5.
DR Proteomes; UP000694005; Chromosome A05.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 3.30.60.90; -; 1.
DR InterPro; IPR046349; C1-like_sf.
DR InterPro; IPR004146; DC1.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR043145; Znf_ZZ_sf.
DR PANTHER; PTHR46288:SF82; CYSTEINE_HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN; 1.
DR PANTHER; PTHR46288; PHORBOL-ESTER/DAG-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF03107; C1_2; 3.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57889; Cysteine-rich domain; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000011750};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 96..147
FT /note="Zinc finger PHD-type"
FT /evidence="ECO:0000259|SMART:SM00249"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 189..213
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 189..204
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 253 AA; 28956 MW; 4A53C858BB9B4DBC CRC64;
MASRKPKAKP VSRQSVRHQS HSHPLRVFKA KEDDETVCSG CELELTGQAF KCTKSDCDYL
LHKSCFDLPG ETHHKSHKDH PLTLLYSPPD DESVYTCNAC DQYGSGFTYH CSNCKYNLHV
GCASLPETIL REDHEHPLTL LYCTSCKGRE DTTFICSACD ETVLEDLWVY YCRECDYGTH
VYSCAAYEDQ ESNEEEEEEE EEGEASTSPA SRIKSLMKAQ DEMAAMQLEA RIMNDANEAA
LDLWDQPKRR YYW
//
