ID A0A397ZIH4_BRACM Unreviewed; 1044 AA.
AC A0A397ZIH4;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE RecName: Full=FYVE-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=BRARA_D00643 {ECO:0000313|EMBL:RID65452.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RID65452.1, ECO:0000313|Proteomes:UP000264353};
RN [1] {ECO:0000313|EMBL:RID65452.1, ECO:0000313|Proteomes:UP000264353}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM010631; RID65452.1; -; Genomic_DNA.
DR RefSeq; XP_009147090.1; XM_009148842.2.
DR AlphaFoldDB; A0A397ZIH4; -.
DR GeneID; 103870680; -.
DR KEGG; brp:103870680; -.
DR OrthoDB; 551430at2759; -.
DR Proteomes; UP000264353; Chromosome a4.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00065; FYVE_like_SF; 1.
DR CDD; cd13365; PH_PLC_plant-like; 1.
DR Gene3D; 2.30.29.30; Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB); 1.
DR Gene3D; 2.130.10.30; Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR013591; Brevis_radix_dom.
DR InterPro; IPR027988; BRX_N.
DR InterPro; IPR011993; PH-like_dom_sf.
DR InterPro; IPR001849; PH_domain.
DR InterPro; IPR009091; RCC1/BLIP-II.
DR InterPro; IPR000408; Reg_chr_condens.
DR InterPro; IPR000306; Znf_FYVE.
DR InterPro; IPR017455; Znf_FYVE-rel.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR22870; REGULATOR OF CHROMOSOME CONDENSATION; 1.
DR PANTHER; PTHR22870:SF454; REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN; 1.
DR Pfam; PF08381; BRX; 1.
DR Pfam; PF13713; BRX_N; 1.
DR Pfam; PF01363; FYVE; 1.
DR Pfam; PF16457; PH_12; 1.
DR Pfam; PF00415; RCC1; 6.
DR PRINTS; PR00633; RCCNDNSATION.
DR SMART; SM00064; FYVE; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF50729; PH domain-like; 1.
DR SUPFAM; SSF50985; RCC1/BLIP-II; 1.
DR PROSITE; PS51514; BRX; 1.
DR PROSITE; PS00626; RCC1_2; 1.
DR PROSITE; PS50012; RCC1_3; 7.
DR PROSITE; PS50178; ZF_FYVE; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00091}.
FT REPEAT 233..287
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 288..339
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 340..394
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 395..446
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 457..508
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 509..560
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 561..612
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT DOMAIN 617..679
FT /note="FYVE-type"
FT /evidence="ECO:0000259|PROSITE:PS50178"
FT DOMAIN 950..1005
FT /note="BRX"
FT /evidence="ECO:0000259|PROSITE:PS51514"
FT REGION 150..183
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 759..781
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 883..950
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1003..1044
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 783..859
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 883..949
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1004..1023
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1030..1044
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1044 AA; 114256 MW; D9B87ABF7315AA3C CRC64;
MADPSSYVNH DRDVDQALIA LKKGCQLLKY SRKGRPKFRS FRLSRDETAL LWLSHGEEKS
LKLSTVSRLL PGQRTAVFRR YLRPEKDYLS FSLIYHNGDR SLDLICKDKA ETEVWFTGLK
SLIRKNHNKQ ARSEVPEIHD SDIFSTGRPS TASLEFIPNN NTRRGRTSLD LGPRNNNSPI
PFRDSDVASE RISMLRPSTD GFRISISSTP SCSSGGSGGP DDIESLGDVY VWGEVWSDGI
SSSYNGTMNS KTVRTDVLIP RPLESNVVLD VHQIACGIRH ISLVTRQGEV FTWGEEAGGR
LGHGIQVDVS RPKLVEFLAL TNIDFVACGE YHTCAVSTAG DLFTWGDGIH NVGLLGHGSD
LSHWIPKRVS GPVEGLQVLS VACGTWHSAL ATANGKLFTF GDGAFGVLGH GDRESVSYPK
EVKMLSGLKT MKVACGVWHT VAIVEVINQT STSVSSRKLF TWGDGDKNRL GHGNKETYLI
PTCVSSLIDY NFHQIACGNT LTVALTTSGH VFTMGGTSHG QLGSSNSDGK LPCLVQDRLV
GEFVEEIASG DHHVAVLTSR NEVFTWGKGS NGRLGHGDTE DRKTPTLVEA LKERHVKSIS
CGSNFTSSIC IHKWVSGADQ SVCSGCRQPF GFTRKRHNCY NCGLVHCHAC SSKKALKAAL
APTPGKPHRV CDACYAKLKA GGDNSNAANR YNTTPSAVRP VRETRSSRII LTPKTEPVKY
SEVRSSRSES SIVRSSQVPA LQQLKDVAFP SSLSAIQNAF KPNSTSRRGG SPPRSSGFSR
SVVDNLKKTS GKINQEMTKL QSQVRKLKQK CDSQGIEIQR LRKTAREASE LAIRHSSKHK
AATEVMKSVA EHLRELKEKL PPEVSKCEAF ESMNSQAEAY LNASEAAETS QDTTLSENSQ
DQNIEEHPSS SNGGAMMSQE PSNTTNINPH PSDSRPPAEA SSSPSKSGGK ELIEQFEPGV
YVTYVLHKNG GKIFRRVRFS KRRFDEHQAE EWWNSKKDRM LKSYSHQVSS SGPMATESVP
TPTSVQPPSS PTQPNSDDQE GGLK
//
