ID A0A397ZV18_BRACM Unreviewed; 752 AA.
AC A0A397ZV18;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE RecName: Full=glycerophosphodiester phosphodiesterase {ECO:0000256|ARBA:ARBA00012247};
DE EC=3.1.4.46 {ECO:0000256|ARBA:ARBA00012247};
GN ORFNames=BRARA_C01157 {ECO:0000313|EMBL:RID69035.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RID69035.1, ECO:0000313|Proteomes:UP000264353};
RN [1] {ECO:0000313|EMBL:RID69035.1, ECO:0000313|Proteomes:UP000264353}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a sn-glycero-3-phosphodiester + H2O = an alcohol + H(+) + sn-
CC glycerol 3-phosphate; Xref=Rhea:RHEA:12969, ChEBI:CHEBI:15377,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30879, ChEBI:CHEBI:57597,
CC ChEBI:CHEBI:83408; EC=3.1.4.46;
CC Evidence={ECO:0000256|ARBA:ARBA00029315};
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DR EMBL; CM010630; RID69035.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A397ZV18; -.
DR Proteomes; UP000264353; Chromosome a3.
DR GO; GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IEA:UniProtKB-EC.
DR GO; GO:0006071; P:glycerol metabolic process; IEA:UniProtKB-KW.
DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR CDD; cd08603; GDPD_SHV3_repeat_1; 1.
DR CDD; cd08604; GDPD_SHV3_repeat_2; 1.
DR Gene3D; 3.20.20.190; Phosphatidylinositol (PI) phosphodiesterase; 2.
DR InterPro; IPR030395; GP_PDE_dom.
DR InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR PANTHER; PTHR43620:SF46; GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL6-RELATED; 1.
DR PANTHER; PTHR43620; GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; 1.
DR Pfam; PF03009; GDPD; 2.
DR SUPFAM; SSF51695; PLC-like phosphodiesterases; 2.
DR PROSITE; PS51704; GP_PDE; 2.
PE 4: Predicted;
KW Glycerol metabolism {ECO:0000256|ARBA:ARBA00022798};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..17
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 18..752
FT /note="glycerophosphodiester phosphodiesterase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5017210983"
FT DOMAIN 41..339
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
FT DOMAIN 355..655
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
SQ SEQUENCE 752 AA; 80698 MW; 8A35843146B39362 CRC64;
MLRSFIIFSL FLHSCVAAPQ TPTAAAAVPA KKWLTLNGQE PGVVARGGFS GLFPESSASA
NAFAISTSSP GLTMLCNLQM TKDGVGICLP DIRLDNSTTI STLFPKAQKT YKVNGQDLKG
WFALDYSADT IFSNVSLVQN IFSRPSIFDG QMPISAVEDV LGTKPPKFWL SVQYDSFYME
HKLSAAEYLK TLRFRGITFI SSPEIAFLKS IGMDAGMSKT KLIFEFKDPE AIEPTTNKKY
SELLLDLAAI KAFASGVLVP KDYIWPLDSA NYLKPASTFV ADAHKAGLEV YASGFANDLR
TSFNYSYDPS AEYLQFVDNG QFSVDGFITD FPPTASQAIS CLSHQQGNLP KANHALVITH
NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC HDSADLTTST TAMTTFMSRA
TSVSEIQPTN GIFSFDLTWA EIQSLKPQIL SPFLTKGGFQ RNPANKNAGK FITLVDFLEF
SKEKAVTGVL INIENAAYLA SKKGLGIVDT VQSAITKSTL DKQLTQKVLI QSDDSSVLSS
FAAVPPYTRV LTIDKEIGDA PKPSIDEIKK HAEAVNLKRS SLVTTSKNFA TGKTNVVEEM
HKGNVSVYVS VLRNEYLSIA FDYFSDPTVE IATFIAGNSV DGVVTEFPVT ATRYLRSPCS
DLNKEQPYAI LPVEAGALLS VAAKEAQAPA SAPNPPLDAR DVIDPPLPPI ANIVSANASG
EAPGHSGTIA TTADLGLSWL AVLVLGLLFA AG
//
